Pseudoliparis swirei (Mariana hadal snailfish): 130200706
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Entry
130200706 CDS
T09868
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pswi03016
]
130200706 (rtcb)
Enzymes [BR:
pswi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
130200706 (rtcb)
Transfer RNA biogenesis [BR:
pswi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130200706 (rtcb)
Prokaryotic type
tRNA splicing ligases
130200706 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
130200706
NCBI-ProteinID:
XP_056281168
LinkDB
All DBs
Position
10:complement(899153..906959)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLEKISGNCWRIKKGFVPNMQVEGTFYVNEPLQKLIFEELRNACRGGGFG
GFLPALKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMGDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYVEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIVVNDRQLACARIFS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFVTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRPRTLLLHRKGTTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTERGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDRLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctcgagaaaatcagcggcaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggtggaaggaaccttctacgtgaacgag
cctctgcagaagctgatctttgaggagctgcgtaacgcctgtcgaggaggaggtttcgga
ggtttccttcccgctctgaagcagatcggcaacgtggcggcgctgccggggatcgtccac
aggtccatcgggctgcccgacgtccactccggatacggcttcgccatcggcaacatggcg
gccttcgacatgggcgacccggacgccgtggtgtctccagggggcgtcggcttcgacatc
aactgcggcgtgcggctgctgaggaccaacctggacgagggcgacgtgcagccggtgaag
gagcagctggcccaggcgctgttcgaccacatcccggtgggcgtcggctccaagggcgtc
atccccatgggggccagggacctggaggaggccctggagatgggcgtggactggtccctg
agggagggctacgcctgggccgaggacaaggagcactgtgaggagtacggccgcatgctg
caggccgaccccaacaaggtgtcctccaaggccaagaagaggggcctgccacagctgggg
actctgggagcagggaaccactacgttgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagcagagggctggggcaccaggtggccacagacgctctggttgccatggagaaggcg
atgaagcgggacaagatcgtggtgaacgaccggcagctcgcctgcgctcgcatcttctct
caggagggccaggactacctgaagggcatggcggccgcaggcaactacgcctgggtcaac
cgctcctccatgaccttcctcaccagacaggcgttctccaaggtgttcgtgacgacgccc
gacgacctggacatgcacgtgatctacgacgtgtcgcacaacatcgccaaggtggaggag
cacatggtggacgggcggccgcgcacgctgctgctgcaccgcaagggcaccacccgcgcc
ttccccccccaccacccactcatccccgtggactaccagctcaccgggcagccggtgctg
attggaggaaccatgggaacctgcagctacgtcctcacgggcaccgagcgcggcatgacg
gagacgttcggcaccacctgccacggagcgggtcgcgctctgtctcgagcgaagtcccgc
aggaacctggacttccaggacgtcctggaccggctggcggaccagggcatcgccatccgg
gtggcgtcccccaagctggtgatggaggaggcaccggagtcctacaagaacgtgacggac
gtcgtgaacacgtgtcacgaggcgggaatcagcaagaaggccatcaagctgagacccatc
gccgtcatcaagggttaa
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