Pseudoliparis swirei (Mariana hadal snailfish): 130200803
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Entry
130200803 CDS
T09868
Symbol
samm50l
Name
(RefSeq) sorting and assembly machinery component 50 homolog B
KO
K07277
outer membrane protein insertion porin family
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130200803 (samm50l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130200803 (samm50l)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130200803 (samm50l)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial protein import machinery
Outer membrane
TOB/SAM complex
130200803 (samm50l)
Transporters [BR:
pswi02000
]
Other transporters
Pores ion channels [TC:
1
]
130200803 (samm50l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Omp85
DUF4277
Motif
Other DBs
NCBI-GeneID:
130200803
NCBI-ProteinID:
XP_056281320
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All DBs
Position
10:8347542..8356359
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AA seq
470 aa
AA seq
DB search
MGTVHAKSLDPLPMHGRDLGVHPDDLVEPPEPEQESKQEILENKDVVVQHVNVQGLGRTK
EDLLGYEISEVFHAKNLIDVMKKSHIARQRLLRLGIFKEVEVLIDTSEGSDALPNGLDVT
FEVTEVKRLTGSYNTMVGNNEGSMVLGVKLPNTFGRAEKLTFQFSYGTKETSYGLSFFKP
QPGHFDRNLTLNMYKVTGQFPWSSLKETDRGGSAEFNFPLGRTNHTLKWEGVWRELGCLA
RSASFAVREESGHSLKSALSYTVSVDSRNSAIFPSRGALLRINQELAGYTGGDVSFLKED
FELQLNRRLFWDSVLSASLWGGMLCPIGNQPSCIADRFYLGGPTSVRGFGMYSIGPQSEG
DYLGGEAYWAGGLHLYTPLPFRPGKGGFGDLFRTHFFLNAGNLCNLNYGDGPRAHLQKLA
ESMRWSYGAGIVLRLGNIARLELNYCVPMGVQSGDRICDGVQFGAGIRFL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgtccatgccaagagcctggatcctctcccgatgcatggccgggacttgggg
gtccaccccgacgacctagtggagcctccggaaccggagcaggagtccaagcaggagatc
cttgaaaacaaagatgtggtcgtgcagcacgtcaacgtccagggactcgggagaactaaa
gaggacctgctcggctacgagatctctgaggttttccacgccaaaaacctcatcgacgtc
atgaaaaaatctcacatcgccagacagaggctgctccgtctgggcatcttcaaagaggtg
gaggttctgatcgatacgtctgaaggttcggacgctttgcccaacggactggatgtgacc
tttgaggtgacggaggtcaagaggctgacagggagctacaacaccatggttggcaacaat
gaaggaagcatggtgctcggtgtaaagttgcccaacacgttcggtcgagcggagaaactc
accttccagttctcctacgggaccaaggagacgtcctacggcctgtccttcttcaagccc
cagccgggacactttgatcgcaacctcaccctcaacatgtacaaagtgaccggtcagttc
ccatggagctccttaaaagagacggacagaggcggatctgcagagtttaatttccctctg
gggaggaccaaccacacgctgaagtgggagggcgtgtggcgcgagctgggctgcctggcg
cgcagcgcgtccttcgccgtgcgcgaggagagcggacactcgctgaagtccgccctctcg
tacaccgtgtctgtggattcaaggaactccgccattttccccagccggggcgccttgctc
cggatcaaccaggaactggcgggctacacgggaggagacgtcagcttcctgaaggaggac
tttgagctgcagctcaacagacggctcttctgggactcggtcctgtctgcgtctctgtgg
ggggggatgctttgtcccatcgggaaccagccatcctgcatcgctgacaggttctacctc
gggggtcccaccagtgtgcgaggatttgggatgtacagcatcgggccgcagagtgaaggt
gactatttgggtggagaggcgtactgggcaggcggcctgcatctctacacgccgctgccc
ttcagaccgggcaagggcggcttcggagacctcttcagaacgcacttcttcctcaacgcg
ggcaacctctgcaacctcaactacggtgacggcccccgagctcacctccagaagctggct
gaaagtatgcgctggtcgtacggagccggcatcgtgctgcggctcggcaacatcgccaga
ctggagctcaattactgcgttcccatgggggtccagagtggagacaggatatgtgacggc
gtccagttcggagcagggattcgcttcctgtga
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