Pseudoliparis swirei (Mariana hadal snailfish): 130200819
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Entry
130200819 CDS
T09868
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
130200819
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130200819
Transporters [BR:
pswi02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
130200819
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
130200819
NCBI-ProteinID:
XP_056281344
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Position
10:complement(10757302..10767783)
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AA seq
611 aa
AA seq
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MKGDAVKACAPNGIDQAKGQKPPSEDKMEERGQWSNKMEFILSVAGSIIGLGNMWRFPYL
CYKNGGGAFLIPYLIFLFTCGVPVFFLEVALGQYTSEGGITCWRKISPLFEGLGYGTQVI
VTLLNFYYIIVLAWGIFYLSYSFSWDLAWASCNNTWNTANCVELQRRNTSIEQTIDPNAT
SPVIEFWERRVLRISQGLDHMGSLNWDLVLCLFIAWVMCYFCIWKGVKSTGKVVYFTATF
PYLMLIVLLIRGLTLPGAGIGIQFYLYPDLGRLLDPQVWMDAGTQIFFSYAICLGSLTAL
GSYNKYNNNCYRDCIALCFLNSATSFVAGFAIFSILGFMSYEQNVPISEVAVSGPGLAFI
AYPRAVSMMPFSPLWAALFFIMIVFLGLDSQFVCVESLVTAIVDMYPTVFRRKNRRELFL
LALVLLSFFMGLIMLMEGGMYVFQLFDYYAASGMCLLFMAIFESVCIAWVYGADRFYDNI
EDMIGYRPGRYFKYCWLFFTPATCIGTFAFSLIKYTPLKYNNVYVYPWWGNAIGWLLALA
SMVCIPLWMVYKISTTQGTFRERIQLLITPSDTLPKTKREQEKLLAIFAPEGDATMTGNG
YYPVSETDSNL
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtgacgctgtcaaggcgtgcgccccaaatggcatcgaccaagccaagggccag
aagcccccgtcggaggataagatggaggagcggggccagtggagcaacaagatggagttc
attttgtccgtcgccggctccatcatcggcctgggcaacatgtggcgcttcccttacctc
tgctacaagaatggaggcggtgcgttcctcatcccctacttgatcttcctgttcacctgc
ggtgttcccgtcttcttcttggaggtagctctgggccagtacaccagcgagggaggcatt
acctgctggaggaaaatcagtccgctgtttgaaggtctcggctacggcacccaggtgatc
gtgactctgctgaacttctactacatcattgttctggcctggggcattttctacctgtcc
tactccttctcctgggacctggcctgggcgtcctgcaacaacacctggaacacagcaaac
tgcgtggagttacagaggagaaacacctcaattgaacaaacaatcgacccgaatgccacc
tctcccgtcatcgagttctgggagagaagagtgctccggatttcccagggcctcgaccac
atgggctctctgaactgggacctggtcctgtgtctgttcatcgcctgggtcatgtgctac
ttctgcatctggaagggggtgaaatccacaggaaaggtggtctacttcacggcgaccttc
ccctatctgatgctgattgtgctgttgatcagggggctcaccctgcccggtgctgggatc
ggcatccagttctacctttatccagacctgggacgcctgctcgaccctcaggtgtggatg
gatgctggcacccagatcttcttctcctacgccatctgtttagggtcactgactgctctg
ggaagctacaacaaatacaacaataactgttaccgggattgtatcgcgttgtgctttctg
aacagtgccaccagctttgtagcgggctttgccatcttctccatcctgggcttcatgtcc
tatgagcagaatgttcctatctcagaggtggcagtatctggtcccggcctggccttcatt
gcgtacccgcgcgctgtgagcatgatgcctttctctcctctgtgggccgccctcttcttc
atcatgatcgtcttcctggggctcgacagtcagtttgtgtgtgtcgagagcctggtgaca
gcaatagtcgacatgtaccccaccgtgttccgccgtaaaaaccgcagggagctcttcctg
ttagccttggtcctcctctccttcttcatgggcctcatcatgctgatggagggaggcatg
tatgtgttccagctctttgattactatgcagccagtggcatgtgtcttctcttcatggcc
atctttgaaagtgtctgcattgcatgggtctatggtgcagatcgcttttatgataacatt
gaggacatgattggctaccgtccaggacgctacttcaagtactgttggttgttcttcacc
ccggccacttgcattggtacctttgccttctccctcatcaaatacacccctctaaagtac
aacaacgtctatgtgtacccttggtggggtaatgcaattggctggctgctcgctctcgcc
tccatggtctgcattccactttggatggtgtacaagatcagcaccacccaagggacgttc
agagagcgcatccagctgctaatcacaccatcggacaccttacccaaaaccaagagggag
caggagaagctgctggccatctttgctccggagggagatgctaccatgactggaaatggt
tactaccctgtctcagagacagactccaacttataa
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