Pseudoliparis swirei (Mariana hadal snailfish): 130200919
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Entry
130200919 CDS
T09868
Symbol
ppfibp1a
Name
(RefSeq) liprin-beta-1 isoform X1
KO
K27096
liprin-beta
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130200919 (ppfibp1a)
Membrane trafficking [BR:
pswi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
130200919 (ppfibp1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
DUF16
SVN
Motif
Other DBs
NCBI-GeneID:
130200919
NCBI-ProteinID:
XP_056281466
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All DBs
Position
10:5885480..5907662
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AA seq
908 aa
AA seq
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MMSDASDMLAAALEQMDGIIAGSKAMDYSNGLYDCQSPTSPFLGGLRVLHLLEDLRGVLE
LMDIEERDNLRCQIPDSTADGLAEWLQGRLTNGHGPAAVYQERLSRLESDNECLVLQVSV
LTDQVEVQGEKIRDLDTCLDHHRQKLNSTEESLQQLLPSVRLAPQELLTRTALETHELEL
MAEVSSLRLKLTAVERDHRDKEGLHQEVTDLRFRVTDIETERLQCEEKLAVTQEELQLLQ
RQLEEREEDLRRLKDESRLRGESHSRAEGGGERDTEVMKMKMVLESLASTNDVKEQRIKE
LEESLTKCKKEPEQVKERFNEDDYDDIPDDPSVSVSMEVDQVTAALEGEAGRSSGESIPC
IAVLSEMNDLDREQQLQASGSLSDVPQPGSSGTVSSSDQAKNKAGPGSSSPSRAGDGSFG
TKKARSSFGRGFFKLRGGKQMASSPNLDRTRSASAPALAEAERKGTDHLDLAGVAPRKSH
DGAQLPSSPETKKKSKGFRKFFGRLKRSHSSSFNLDDEASEMEFRRGGVRATAGPRLGWS
RDSKHNVVDVPFAQWSRDEVCAWLHQLGLGLYIAQGQSWIKSGQTLLRASQHDLEKELCM
KHPLHRKKLQLALQALGSEDDDLKGRLDHNWVTRWLDDIGLPQYKSHFDEARVDGCMLHY
MTVEDLLSLKVGSVLHHLSIKRAIQVLRLNCYEPNCLRRRPSDENNMTPAEVSQWTNHRV
MEWLRSVDLAEYAPNLRGSGVHGGLMVLEPHFNVEALALLLNIPPNKTLLRRHLATHFQL
LVGSEAQRLKQDCLENPDYVVLTAIAKVKPRRLSFGGFGTLRKKRHDDADEYVCPMNVEM
PKSSSFQAGVLYEEHLDHLEQMEDSEGTVRQIGAFSEEINNLTSMLKEDETFLEISDDAA
ETDHNAGV
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccgacgccagcgatatgttggcagcagccttggagcaaatggatgggatcata
gcaggctccaaggccatggactactccaacgggctgtacgactgccagtcgcccacctcg
ccgttcttgggcggcctgcgggtgctgcacctgctggaggacctgcggggggtgctggag
ctcatggacatcgaggagagggacaacctgcggtgccagatcccggattccaccgcggac
gggctggccgagtggctgcagggccgattgaccaacggccacggcccggcagccgtctac
caagagcgcctgtcgcggctggagagtgacaacgagtgtcttgttctccaggtaagtgtt
ctcacagaccaggtagaggtgcaaggggaaaagattcgggacctggacacctgcctggat
catcatcggcagaaactcaactccacggaggagtcgctgcaacagcttttgccaagtgta
cgccttgccccacaggagctgctgacgcggacggcgctggagacccacgagctggagctg
atggccgaggtgtccagtctgaggctgaagctgacggccgtggagagagaccacagggac
aaggagggcttgcaccaggaagtgacggacctgcggttcagggtgaccgacatcgagacc
gagcgactgcagtgtgaggagaagctcgccgtcacccaggaggagctgcagcttctgcag
aggcagctggaggagcgggaggaggacctgaggaggctgaaggacgagagcagactgagg
ggggagagccacagcagagctgagggaggaggagagagagatactgaagtgatgaagatg
aagatggtgttggagtccctggcgtcgaccaacgacgtgaaggagcagcggataaaggag
ctggaggagtcgctcactaagtgcaagaaagagccggagcaggtcaaagagaggtttaat
gaagacgactacgacgacatcccagacgatccctcggtttccgtatccatggaggtggat
caggtgacggcggcgttggaaggggaggcaggaagaagctctggcgagtccattccgtgt
atagcagtgctctctgaaatgaatgacctggacagggaacaacagttacaggcgtccgga
agtctatcagacgtcccacagccaggcagctcaggcactgtgagcagcagcgatcaggcc
aaaaataaagcaggacccggttcctcgtctccttccagagccggcgacgggagtttcggg
accaagaaggcccgttcttctttcggccgtggcttcttcaagctgcgtggaggcaagcag
atggccagctctccgaacctggatcgcacccggagtgccagtgcacctgcgttagctgag
gcggaacgtaagggcacagatcacctggacttggccggcgtcgcgccgaggaaatctcac
gacggagcccagctgccgtcctcgccggaaaccaaaaagaagtccaaaggcttcaggaaa
ttctttggcagactaaagaggagccactccagctccttcaacctcgacgatgaagcatcg
gagatggagttcaggaggggaggagtcagagccacggccggccctcgacttggctggtca
cgtgactccaagcacaacgtggtcgacgttcccttcgcgcagtggagtcgagatgaagtg
tgtgcgtggctgcatcagctgggcctcggcctgtacatcgctcagggccagagctggatc
aagtcgggccagacgctcctcagagcatcgcaacacgacctggagaaggagttgtgcatg
aagcatccgctccacaggaagaagctgcagctggctctgcaggctctcgggtccgaggac
gacgacctgaagggcagactggaccacaactgggtgacccggtggctggacgacatcggc
ctgccgcagtacaagagtcactttgacgaggctcgtgtggacggatgcatgctgcactac
atgacggtggaggacttgctgtctctgaaggtgggcagtgttctccatcacctcagcatc
aagagggccattcaggtcctccgcctcaactgctacgaacccaactgcctcaggcgacgg
ccctctgacgagaacaacatgaccccagcggaggtctcccagtggaccaaccaccgagtg
atggagtggctgcgctccgtggatttggccgaatacgctcccaatctgaggggcagcggt
gttcatggaggactgatggtgttggagccgcacttcaacgtggaagcgctcgccctcctg
ctcaacatccctcccaacaagacgctgctgaggcgccacctggcgacacatttccagctg
ctcgtcggctccgaggcgcagcggctcaaacaggactgtctggagaaccccgactacgtc
gtcctcaccgccatcgccaaggtcaagccccgacgcttgtcattcgggggtttcggcact
ttgaggaagaagcgtcacgacgacgccgacgagtacgtctgccccatgaacgtggagatg
cccaagagcagcagcttccaggcgggcgtcctctacgaggagcacctcgaccacctggaa
cagatggaagactccgaaggcaccgtgagacagatcggagcgttttctgaggaaatcaac
aatctaacgagcatgctgaaggaagacgagacttttctggagatttccgatgacgcggca
gaaaccgaccacaacgccggggtttga
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