KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130200992
Entry
130200992         CDS       T09868                                 
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082  ATP-dependent chromatin remodeling
pswi03083  Polycomb repressive complex
pswi04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    130200992
   03083 Polycomb repressive complex
    130200992
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    130200992
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pswi03036]
    130200992
Chromosome and associated proteins [BR:pswi03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     130200992
  Histone modification proteins
   HAT complexes
    HATB complex
     130200992
   HDAC complexes
    Sin3A-HDAC complex
     130200992
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     130200992
    PRC2.2
     130200992
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     130200992
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    130200992
  Chromatin remodeling factors
   NuRD complex
    130200992
   NuRF complex
    130200992
   NuRF complex (fruit fly)
    130200992
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 130200992
NCBI-ProteinID: XP_056281560
LinkDB
Position
11:complement(13856348..13861283)
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDELNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADA
EVQA
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagaagctgcatttgacgatgctgtggaggaaagggtgatcaacgaggag
tacaagatctggaagaagaacacccctttcctctatgacctggtcatgacccacgccctg
gagtggcccagcctcactgcccagtggctgccagatgtcaccagaccggaggggaaagac
tacagcgtacacaggctggtgttgggaacacacacttctgatgagctgaatcacctcgtg
attgcgagcgtccagctccccaatgatgatgcccagtttgatgcatcacactatgacagc
gagaaaggagagtttggaggctttggttctgtaagtgggaagatagagattgagatcaag
atcaaccatgagggcgaggtgaacagagcccgctacatgcctcagaatccttgcatcatt
gccaccaagaccccaaccagtgatgtgctggtatttgattacacaaagcacccctccaag
cctgacccctctggagaatgcactcccgatctgcggttgcgaggacaccagaaggagggc
tatggcctctcctggaacccaaacctcagcggctgcctcctcagtgcttctgatgaccac
acaatctgcctatgggacatcagcacagtgcccaaggaaggaaagatagtggacgccaag
accatcttcacaggccacacagctgtggtggaggatgtttcctggcacctgctccacgag
tcgctctttggatctgtggccgatgaccagaagctcatgatctgggacacacggtccaac
aacacctccaagcccagccacgcagtggacgcccacaccgcggaggtcaactgcttgtcc
ttcaatccctacagtgagttcatcttggccactggctctgcagataagaccgtggctctt
tgggaccttaggaatttgaagctgaagctgcactcgtttgagtctcacaaggacgagata
ttccaggttcagtggtctcctcacaacgaaaccatcctggcctctagcggcaccgacagg
aggctcaacgtctgggacctcagtaaaatcggagaggaacagtcacccgaggatgctgag
gatggccctcctgagctgctgttcatccatggcggacacaccgcgaagatctccgacttc
tcttggaaccccaacgagccttgggtcatctgctcggtatcagaggacaacatcatgcaa
gtctggcagatggctgaaaatatctacaatgacgaggacccagaaggggctgccgatgca
gaggtccaggcatga

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