Pseudoliparis swirei (Mariana hadal snailfish): 130201011
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Entry
130201011 CDS
T09868
Symbol
ubr1
Name
(RefSeq) E3 ubiquitin-protein ligase UBR1 isoform X1
KO
K10625
E3 ubiquitin-protein ligase UBR1 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130201011 (ubr1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130201011 (ubr1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
UBR box proteins
130201011 (ubr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRT6_C
UBR1-like_wing
zf-UBR
ClpS
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
130201011
NCBI-ProteinID:
XP_056281592
LinkDB
All DBs
Position
11:2639069..2655457
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AA seq
1740 aa
AA seq
DB search
MAEGEKSLDGLELSKEWLEAADSRAEMFRYLKEQVPQIFCLKKESSPQEEEELMQSRLFF
PLECFLFGEDPQEGLEKLKQGGTSSQLCGRVFKEGETVYSCRDCAIDPTCVLCMDCFQDS
VHKGHRYKMHASSGGGFCDCGDVEAWKIGPCCSKHDPGAATAMVTDECGLEPEIYGRAEK
LFRILLHYVTDFLVWEESLELSAELQPRTKDNAYYCVLYNDEHHSYDHVIYTLQRSVNCD
QAEAQTHTALIDKEGRRAVKRGTLRSCQQARDLIRSNSEHISLQPLRVEILHAAVMAHQT
FVLRLGPWFQKIISYSVGFRQAFCKVALETNPDAEQPCLISRLMLNDGRMYKGARKIVHE
LIFCSMLMETEFKKLFAIEFTKYYKQLQKDFIIDDHERSISITALSVQIFTVPTLARQLI
EEGNVIKMIVGTVMELLREHLDNNNRFFFLGYNSDKFSRIQIIFHDLRYILISKPSVWTE
ELRREFFEGFKDFLGLLKCMQGMEEVKHQFGQHIAVEPEWEAAFSLQIQLRHILSMFQDW
CSSDVEILLLAFEECHKVLMQCNNQAFHREAINYSMIKHILHICPYKVSQEPVSIHLPIS
RLLAGLYVLLCRTGAVERLQDPERFDHTLLAEHPLRCVVLAAQVSAEMWRRNGLSLVSQV
YYYQDVKCRDEMYDKDILMLQIAASKMDPNHFIMLVLLRFELFDYFKGGLKKDQDLLIQC
NRLTEEMLYLLIVIIGERYVPGISHVTKEDVTMREVIHLLCIEPMAHSSLVKGLPENESH
ETGLETVISKVATFKKPGVSGHGLYGVKKERLVDFNPFFYHYSRSQHSKAEESQKKRRTQ
EGHDKALCPPVPPAFCPAFSSIVRLLSCDILIHILRHSLQRAAEDRPTHWTEAMIQRALH
LMGQALLEEKAQLEESTMEEVAFDFSLKARRIGSEHGKSVFALLSKIKTVPSLDAQKDMV
KWVLQMFEIVKCLREKSSPTASMSVDTTKPEESVQDKEKAERKRKAEAAKVHRQKIMAQM
SAMQKNFIESNKMLYDNMPESVSQVGEPVVTTESCAMDHRELCVAIGPHRGSSPAERELL
TCILCQEEQEVVAQAPAMVLTACVQRSTVLTQCRGRIPTNRADGTGTSYPLFMPPELAVG
THTGSCGHVMHATCWQKYFEAVQNMTRNRLHAELIIDLENGEYLCPLCKSLCNTVVPLIP
FERLMFNYENAEIIGQHLTLPRWIQIISARIKGLKSVAQDNDCNTESTSVDGDAGLCGEG
QPDFRSILSYGVQEPRKFSESIVEMLVVCATTVHRVGLQTAPNEQCPRVPLMAWNTCAFT
IQAIENILQDGGKSLFGSLQNRQLAGLKAIVQFSAAQRIKSSQAVIQRHFNDLLGVLLPV
IGRKNTPSLLEVDFFHLLVGLVLSIPALYQEETVDLQPSAVSSAYNHLHILHLVTMAHML
QVLLSSTDFPAVAGEETEESRAAAELYTAVSQHTERLSPDVSGVSVADRVKRGIEPFLCC
AALFFNCLSGVQPPEELFSTTVSAQGQMEALCSYLALPSNVFQLFQEHREAVTPLLKRWC
GSPAVTKALKGKTPTVRYPRRRNRLIDLPEDYSALLNQASHFQCPNSTDDDRKHPTLCLF
CGAMLCSQSSCCLSQLDGEDVGACTAHAANCGAGVGMFLRIRECEIVLMASRTRGSTYPA
PYLDDYGETDPHLGRGNPLHICPERYRKLNQLWQQHCILEEIARSLEVVNVMFAFEWQML
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggcggagggtgagaaatccctagatgggctggagctcagcaaggaatggctggaggct
gcagacagcagggcggagatgttccgctacctgaaggagcaggtgccacagatcttctgc
ctgaagaaggagtccagccctcaggaggaagaggagctcatgcagagccgactcttcttc
cctctggagtgcttcctgtttggagaggatcctcaggagggtttggagaagctcaagcag
ggcggcacctcctcccagctctgtggacgcgtgttcaaagagggagagacggtctactcc
tgcagggattgtgcaatagatcccacttgtgtcctgtgcatggactgcttccaggatagc
gtgcacaaaggccatcgttacaagatgcacgcgtcatcaggagggggcttctgtgattgt
ggggacgtggaagcctggaagattggcccctgttgctccaaacacgaccctggggcagcc
actgccatggtaacggatgagtgtgggctggagccggagatatatggccgcgctgagaag
ctgtttcggatactgctgcactacgtcacggacttcttggtttgggaggagagccttgag
ctatcggcggagctccagccccggaccaaagacaatgcatactactgtgtactgtacaat
gatgagcaccactcgtacgaccatgtgatctacaccctgcagcgttctgtcaactgtgat
caggctgaagctcagacacacacggcacttatcgacaaagagggtcggcgggcagtgaag
agagggacccttcgttcctgtcaacaagcaagagatctcatcaggtccaactccgaacac
atttccctgcagccgctacgtgtggagatccttcacgcagcagtaatggctcatcagacc
tttgttctgcgcctcggcccctggttccaaaagatcatcagttactcagtgggcttcaga
caggccttctgtaaggtggccctagagaccaatccagacgcagagcagccgtgcctcatc
agcagactcatgctgaacgatggcaggatgtacaaaggagctcgcaagatagtccatgaa
ctgattttctgcagcatgctcatggagacggagttcaagaagctttttgcaattgagttc
acaaagtactataagcagctgcaaaaggacttcataattgatgaccatgagaggagcata
tccatcactgctctgtctgttcagatattcactgtacccacattggccagacaactcatc
gaagaaggcaatgtcattaaaatgatagtcggaactgtcatggaattgcttcgtgaacat
ctggataacaacaatcgcttcttcttccttggctacaactccgacaagttctcacgcatc
cagatcatcttccacgacttaaggtatattctgatcagtaagccctcagtctggactgaa
gagctgcggagagagttcttcgagggattcaaagactttcttgggcttctcaaatgcatg
cagggtatggaggaagtgaagcaccagtttggtcaacacattgcggtcgagcccgaatgg
gaggctgccttttctcttcagatccagcttcgccacatcctttctatgtttcaagactgg
tgttcctctgatgtcgagatcttgctgcttgcatttgaagagtgccacaaagtcctgatg
cagtgcaataaccaggccttccaccgagaggccattaactactccatgataaagcacatc
ctccacatttgtccgtacaaagtgtctcaagagccagtcagcatacatctgcccatctcc
aggctactggctggtttgtatgtacttctgtgcagaaccggggcagttgaacgtctgcag
gatcctgagcgctttgaccacaccctgctggcagagcatcctctgcgctgtgtggtgctg
gctgcacaagtctcggctgaaatgtggcggagaaacgggctttcattggtcagccaggtc
tactactaccaggatgtaaaatgcagggacgagatgtatgataaggacattctcatgctc
cagatagctgcttccaaaatggaccccaaccacttcatcatgctggtcttgttgagattt
gagctctttgattattttaaaggaggtctaaagaaagaccaggatctactgatccagtgc
aaccgcttgacagaagagatgctgtacctccttatcgtcatcattggtgagcgctatgtc
cccggtatcagtcatgtgaccaaagaggatgtgactatgagggaggttatccacctgctg
tgcattgaaccaatggctcatagtagcctggtcaaaggtctgccggagaacgagagccat
gaaacaggcctggagactgttatttccaaagttgccaccttcaagaaaccaggagtttca
gggcatggattgtatggcgtaaaaaaagagcgtctggtagacttcaaccctttcttctac
cactattcaagatcccagcatagcaaggcagaagagtctcagaagaagaggaggactcag
gagggtcatgataaagctctctgtcctccggtgcctccagccttctgcccagctttctcc
agcatcgtgcgtctgctcagctgtgacattctcattcacatcctgaggcactccctgcag
agggctgcagaggaccggccgactcattggacagaagccatgatccagagggccctgcac
ttgatgggtcaggcattgcttgaagagaaagcgcagcttgaggagagcactatggaggaa
gtggcctttgatttcagcctcaaggcccgcagaattggttcagaacacggcaagtcagtc
ttcgccttgttgtccaagatcaagactgttccttccctcgatgctcaaaaagacatggtt
aaatgggttctacagatgtttgagattgtcaagtgccttagagagaagtccagtccaaca
gcctccatgagtgtggatacaaccaagccagaagagagtgttcaagacaaagagaaagct
gagcgcaaaaggaaggcagaggcagccaaagtccaccggcagaagattatggcccagatg
tctgcaatgcagaaaaacttcattgagtcaaacaagatgctgtacgacaacatgccggag
agtgtgtcacaggttggagagcctgttgtcactactgagagctgcgccatggatcacagg
gagctgtgtgtcgccatcgggccccatcgagggtcctctcccgccgagagggagttgctc
acctgcattctttgccaggaagaacaggaagttgtggcccaggctccagccatggtactg
actgcgtgtgtccagaggtccacagtgctgacacagtgcagagggaggataccgaccaat
agagcagatgggacagggacgtcatatcctctcttcatgcctcctgaactggcagttgga
acccacactggcagttgtggacatgtcatgcacgccacatgttggcaaaaatattttgag
gctgttcagaatatgaccaggaaccggctccatgcggagctgatcatcgacctggagaat
ggggagtacttgtgtcccctgtgcaagtctctgtgcaacactgttgtccccctcatccca
tttgaaaggttaatgtttaactatgaaaatgcagagataattggacagcatttgaccctg
cctcgctggatccagataatctccgccaggattaaaggactcaagtcagtcgctcaggat
aatgattgcaacacggagagcacgagtgttgatggggacgcagggctgtgtggagagggc
cagccagacttcagatccatcctgagctatggagtccaagaaccgaggaagttctccgag
agcatagtggagatgctggttgtttgtgccaccacagttcacagggtgggactgcagacg
gcacccaatgagcagtgcccacgggtgcccctgatggcttggaacacatgcgccttcact
attcaggccatcgaaaacatactgcaggacgggggcaagtcactcttcgggtccttacaa
aacagacagcttgcaggcctgaaggcaattgttcagttttcagcagctcagagaattaag
agctcccaggcagtcattcagaggcactttaacgacttgctgggggtgttgctgccggtc
ataggcagaaagaacaccccttctcttctggaggttgacttcttccatcttctggtgggg
ttggtgttgtctatacctgctctatatcaggaggagactgtcgacttgcagccgtctgct
gtcagctctgcctacaaccacctgcacatccttcatctggtcaccatggctcacatgctg
caggtcctcctttcctctacagattttcccgcagtagcgggagaggagacggaggagtcg
agagcagcagcagagctatacactgccgtgtcacaacacaccgaaaggctgagtccagat
gtgtccggcgtctcagtagcagacagagtgaagagaggcattgaaccattcctgtgctgc
gctgctctcttttttaattgcctttcaggagtgcaacctccagaggagctctttagcact
actgtttccgctcaaggacagatggaggcgctatgcagctacttggcactcccctccaat
gtgttccagctcttccaggagcacagagaggctgttactccactgctgaagaggtggtgt
gggagtccagccgtaaccaaagccctgaaaggcaaaacgccgaccgtcagataccccagg
agaaggaatcgattgattgatctgcctgaggattacagcgctctcctcaatcaagcgagc
cattttcagtgtcccaactctacagatgatgaccggaagcatccgaccttgtgcctgttt
tgcggggccatgttgtgctctcagagctcctgctgcctcagccagctggacggagaagat
gtgggagcttgtacggcccacgctgccaactgtggtgctggagtgggcatgttcctcagg
ataagagagtgtgaaattgtactgatggccagtaggactcgaggaagcacataccctgct
ccttacctggacgactatggggagactgatccccaccttggaaggggcaatccattgcac
atttgcccagagcgctacaggaagctgaaccagctgtggcagcagcattgcatcctggaa
gaaattgcccgcagtctggaggtggtcaacgttatgtttgcctttgagtggcagatgttg
tga
DBGET
integrated database retrieval system
