Pseudoliparis swirei (Mariana hadal snailfish): 130201030
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Entry
130201030 CDS
T09868
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130201030 (shprh)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130201030 (shprh)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130201030 (shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-2nd
SHPRH_helical-1st
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-RING_2
zf-C3HC4_2
TPR_10
DUF684
Motif
Other DBs
NCBI-GeneID:
130201030
NCBI-ProteinID:
XP_056281644
LinkDB
All DBs
Position
11:complement(19750433..19765701)
Genome browser
AA seq
1654 aa
AA seq
DB search
MSSRRKRAPPVRVGEDAKKKLNWNMLDDRKDEETQQDAQWDAQRDAQRDAQRDAQRDAQR
DAQRDAQTPSCSVPPSLSTTQDTARSASQPPGTSSDGAPASASLALTVEPAVEPDHGWKA
LVGEFSVRPARVPSDCERRAFVLHRTGDRLCLSYSGRDESSGLRGPDGDTCTAECGLRGI
PLEDLDWMQKRRVVQLCRRATEEGSVKVGIYLLETGLGKPEFLSEGNARMKKANQLMQKL
MEYFYDFIVPEVVENEEEECDTDLERQNVGELYDYVRHRRKSESREVTYDLQHKALIPVL
RPYQSQAVNWMLKREKYRNTSPKEPVLHFLWRELITLCGKKLFYNPFTGCLIREFPVAGV
EWPGGILADEMGLGKTVEVLALILFHTRQDLKQEALTLPEGKSVNYFVPPPPLERKKVNR
CKSEVQLKMKTSYPTVRVMLLAAIKETRSGKGASGNAVFTYMRATYGYDLSKNRGHVKKM
LAKLTDEGLVDRVKGRGLAGSFRLGKKYKETKKTSAAVGATKPNFKNTESTPRRMFQRRA
KEKAEAALQNSLLAEAQRDRYPLGEEVETTKEWDEGLSERAEDGPDTPRDKKESDTQDSP
RLEGDALQLEAQEAEPPARGSAVPFDGPDYRFECICGELGLLDFKARVQCMHCQLWQHAD
CVNYREESRGTTPFYCPHCLVAMKPVSTGATLIISPSSICHQWVEEINRHIRSSSLRVLV
YQGVKKHGFIQPRALAEHDVVITTYDVLRSELNYVDLPHSNSEDGRRFRNQKRYMAVPSP
LVAVQWWRICLDEAQMVECPTAKAAEMALRLASVNRWCVSGTPVQRGLEDLYGLVLFLGV
DPYWVKHWWVRLLYRPYRRGNTEPLYNVIAQLLWRSAKKDVIDQIQIPPQTEEVHWLHFS
PVEGHFYHRQHEVCSRDALIKLRKISDWSLKLGSLDRRTVHSILGPLLRLRQACCHPQAV
RGEFLPLQKSTMTMEELMKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRDEFPEATEMY
REVLRSSEEHKGRLKTDSLQRLHATHNLIELLSAKHPGIPPTLRDDRLSEETEQLRQHYM
TKYDSEVADAHQALQPVLQNLKELKRKVNLNAPWWLDVVAKATRSSNDDDLVSRIKNELT
SSYKQQANKLTMADKFRDACGLQLLLTTQMQDLLKSQKTVRDAVKSLEGPASTKVIDEVT
ICHLRPMRLPLNNCVFCKADVLFIDYESKLFSHTVKGQTAIFEEMIEDEEGLMDDRLPTT
SRGLWAASETERSLKAILSFAKVKRMDPELLEEGNTFMELFDNWKKEYKVLHEYWMVLRN
HVSAIDELGMATERLRVRLPDEPKPKLLYIIEPHEVEQNRVKLLNDQAVAKSQLQKKLGQ
FLYLTNLEKSQDKSTGGLNPEPCPICARPLGQEWAVLICGHCFCNECIAIIVEQYSVGSR
RRAVQCAICRQTTAHAEISYVFTTQSSSQDQDVPVKGSHSTKVEAVVRTLKKIQVADPGA
KCLVFSTWLSVLDIIAKALFDNNMEFSQINGIRKFQENLCSFKYEEKINILLLPLHTGSN
GLNIIEATHVLLVEPILNPAHELQAVGRVHRIGQTKPTFVHKFLIKSTIEERMQAMLKTA
DKSHTSTTMKHSEAAVLTVADLADLFTEDAEHLE
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgaagaaagagggccccccccgtgagggtgggcgaagacgccaagaaaaag
ctgaactggaacatgctggacgaccgcaaggacgaggagacccagcaggacgcccagtgg
gatgcccagcgggacgcccagcgggacgcccagcgggacgcccagcgggacgcccagcgg
gacgcccagcgggacgcccagacgccctcctgctccgttcctccctctctctccaccacc
caggacaccgcccgcagcgcctctcaacctcccggcacgtcgtcggacggcgcccccgcc
tcagcctccctggccctcaccgtggagccggccgttgagccggaccacggctggaaggcg
ctggtcggggagttcagcgtccggccggctcgggtcccgtcggactgcgagcggagggcg
ttcgtgctccacaggacgggggaccgactctgcctcagttacagcggccgcgacgagagc
tcggggctgcgggggcccgacggggacacctgcacagcggagtgtggcctccgcgggatc
ccgctggaggacctggactggatgcagaagaggagggtggtgcagctctgccgccgggcc
acagaggaggggtccgtcaaggtggggatttacttgctggaaactgggctcgggaagccg
gagttcctcagcgagggaaacgctcggatgaagaaagccaatcaactgatgcagaagtta
atggagtatttctacgatttcatcgtccccgaagttgtagagaatgaagaagaggaatgt
gacaccgacctggagaggcagaacgtgggggagctctacgattacgtccggcatcggcgc
aagagcgagagccgggaggtgacctatgacctccagcacaaggctcttattcctgttctc
agaccctatcagagccaggccgtcaactggatgctgaagagagagaaatacaggaacact
tcacctaaagaaccagttctgcatttcctctggagggagttgatcactttgtgtgggaag
aagttgttctacaacccttttaccggctgcctaatccgagagttccccgtggcgggtgtg
gagtggcccggtggcatcctggctgatgagatgggtctgggaaagacggtggaggtcctg
gctctcatcctgtttcacacccgacaggacctgaagcaggaggccctcaccctgcctgag
ggaaaatccgtaaattatttcgtacctcctcctcctctggagaggaagaaagttaaccgc
tgcaagtctgaagttcagcttaaaatgaaaacatcctacccaactgtgcgcgtcatgctc
ctcgccgcaatcaaggagacgagatcaggcaaaggagcctcgggcaacgccgtcttcacc
tacatgcgcgccacatacggctacgacctctcgaagaaccgcggacacgtcaagaagatg
ctggcgaagctgaccgacgaaggcctggtcgaccgggtcaaaggtcgcggcttggccggc
tcgttcagactgggaaagaagtacaaggaaacgaagaagacctcggcggcggtgggagcg
acgaagcctaacttcaaaaacacggagagcacgcccaggagaatgttccagagacgagcg
aaagagaaggcggaagcggctctgcagaactctcttctggcggaagcccaaagggaccgg
taccccctgggggaggaggtggaaacaacgaaggaatgggacgaaggtctgagcgagaga
gcggaggacgggccggacacgcctcgggataaaaaggagtccgatactcaggactccccc
cgactggagggagatgctcttcagctcgaagcccaggaggcagaaccccccgccagaggg
tccgcggtcccgttcgacggcccggactaccgctttgagtgcatctgtggcgagctgggc
ctcctggacttcaaggcccgcgtccagtgcatgcactgccagctgtggcagcacgccgac
tgcgtgaactaccgagaagaaagccgggggaccacgccgttctactgcccccactgcctc
gtcgccatgaaacccgtctccaccggcgccaccctcatcatctccccgagctccatctgc
caccagtgggtggaggagatcaaccggcacatcaggtcgtcctcgctgcgagtgctggtg
tatcagggtgtgaagaagcacgggttcatccagcctcgcgcgctcgccgagcacgacgtg
gtcatcaccacctacgacgtgctgcgctcggagctcaactacgtcgaccttccccacagc
aacagcgaggacggacggcgcttccgcaaccagaagcgctacatggccgtgcccagcccc
ctggtggccgtgcagtggtggcgcatctgtctggacgaggctcagatggtcgaatgtccc
acggccaaggctgcagaaatggcgctacgcctcgcatccgtcaaccgctggtgtgtcagt
ggtactccggtccagagaggcttagaagatttgtacggcctcgtgctgttcctgggcgtg
gacccgtactgggtgaaacactggtgggtccgcctcctttaccggccgtatcgccgcgga
aacacggagccactgtacaacgtcatcgcccaattgttgtggcgatcggctaaaaaggac
gtcatcgatcagatccagatcccccctcagacggaggaggtgcactggctccacttctcc
cccgtcgagggtcacttctaccaccggcagcacgaggtctgctcccgggacgcgctgatc
aaactccggaagatctccgactggagcctgaagctcggcagcctggaccgccgcaccgtg
cacagcatcctgggcccgctgctgaggctgcgccaggcctgctgccacccgcaggccgtg
aggggcgagttcctgcctctgcagaaaagcaccatgacgatggaggagctcatgaagtcc
ctgcagaagaaatgtcgagtggagtgtgaagaagcccacagacaattggtgtgcgccctc
aacggcctggctggaatccacatcatccgagatgagttcccggaggcgacggagatgtat
agagaagtgcttcgttcctcggaggagcacaaaggccggctgaagaccgactcgctgcag
agacttcatgctacccacaatttgatcgagctgctgagcgcaaagcatcctgggatacct
cccacactgcgagacgaccggctgagtgaggagacggagcagctgcgacagcactacatg
accaaatacgactccgaggtcgcagacgcccatcaggctctgcagccggtgctccagaac
ctcaaagagctgaaacgcaaagtcaacctgaatgctccctggtggctggacgtcgtggcg
aaggcaacccggagctccaacgacgacgacctggtgtcccgcatcaagaacgagctgacg
tccagctacaagcagcaggccaacaagctcaccatggcagacaagttccgtgacgcttgc
ggtctgcagctcctcctcaccactcagatgcaagatctgctgaagtcccaaaagaccgtg
cgagacgccgtgaagagtctcgaaggcccggcttccacgaaagtgattgatgaggtcacc
atatgccacctcaggccgatgagactgccactcaataattgtgttttctgcaaggcggat
gtcctcttcatcgattatgagtccaagctgttttctcacacggtgaagggtcagacggcc
atctttgaagaaatgattgaggatgaagaggggctgatggacgaccgtctcccgacgacc
agccgaggcctgtgggcggccagtgagacggagcgctccctgaaagccatcttgtctttt
gccaaagtgaaacgcatggaccccgagctgctggaggagggcaacaccttcatggagctg
tttgacaactggaagaaggaatacaaggtgctgcatgagtactggatggtgctgaggaac
cacgtgtcggccatcgacgagctgggcatggccacggagagactacgcgtgcgtctgccc
gacgaaccgaagcccaaactcctgtacatcatcgagccgcatgaggtggagcagaacagg
gtgaagctgttgaacgaccaggcggtggccaagtctcaactccagaagaagctcggacag
tttctgtatctcaccaatctggagaagtcccaggacaagtcgaccggaggcctgaacccg
gagccgtgtcccatctgcgcccggcccctgggccaggagtgggcggtgctgatctgcggc
cattgcttctgcaacgagtgcatcgcgatcatcgtggagcagtacagcgtgggctcccgg
cgccgcgccgtccaatgtgccatctgtcggcagaccacggcccacgccgagatctcctac
gtgttcaccacgcagtcgtccagccaggaccaggacgtgccggtcaagggaagccactcg
accaaagtcgaggcagtggtgagaaccctgaagaagattcaagtggccgaccccggggcc
aagtgcctcgtcttctccacgtggctgagtgtcctggacatcattgccaaggccttgttc
gacaacaacatggagttctctcaaatcaacgggattcgcaagtttcaggagaatctgtgc
tccttcaaatacgaagagaagatcaacatcctcctcctgcccctccacaccggctccaac
ggcctgaacatcatcgaggcgacgcacgtgctgctggtggagccgatcctcaaccccgcc
cacgagctgcaggccgtaggccgagtgcaccgcatcggacaaactaagccgacgtttgtt
cacaaattcctcatcaaatccaccatcgaagagaggatgcaggcgatgctgaagaccgcg
gacaaaagccacaccagcacgaccatgaagcactcggaggcggccgtgctgaccgtcgcc
gacctggcggatctgtttactgaagacgcagaacatctggagtga
DBGET
integrated database retrieval system
