Pseudoliparis swirei (Mariana hadal snailfish): 130201114
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Entry
130201114 CDS
T09868
Symbol
msh4
Name
(RefSeq) mutS protein homolog 4
KO
K08740
DNA mismatch repair protein MSH4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130201114 (msh4)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Meiosis-specific proteins
Others
130201114 (msh4)
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Ortholog
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GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
AAA_14
AAA_22
nSTAND3
AAA_27
AAA_23
Motif
Other DBs
NCBI-GeneID:
130201114
NCBI-ProteinID:
XP_056281806
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All DBs
Position
11:2960573..2968463
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AA seq
920 aa
AA seq
DB search
MFGSSTEEVGDTSGCGLPWGESPMGRSQRNETTSYGPASVSSGSSHRGLEEGSASSGHGS
SLPQVASGPSHQSFRSGRNSSLVFTSDSSSLRSRGGSPKRRWTPAFPGATGAHPSRTPLT
DHTATSCSSATTTSGASVIVAVVEGRGLARGEIGMASLNLNCPELVLSQFADTGTYAKVI
TKIHISVPLEILMPDTASEKGKGTKLFSFITENFPGVAFTAIQRKYFNERKGLEYIQQLC
APEFGTVLMEVQAKYYCLAAAAALLKYLEFIQNSVYGGKSLKVIFKGSEQTAMIDSTSAI
NLELVVNNRDHRSEHTLLGVLNHTKTTGGARRLRSNILEPLIDVDTINMRLDTIQELLRD
EELFFGLKDAIAHFLDIDQLLSVLVQIPKQETVQVAEAKITHVIQLKHTLDLVPRLRMVL
KNCNTALLKAYSTALEDNRFDVILEQIKTVINEDITYLKGSLNLRTQKCYAVRPDINEFL
DIARRAYTEIVDDIAGLVSQMAEKYGFPMRTSYSTARGFFIQMKLEGVVLPEGKLPTEFI
KVSKNKNNYSFTIADLMKMNDRCDEALREIFHMSYVVMCQLLSTIHQHIHCLYKLSDAVS
MLDMLLSLANVCTISDYVRPEFTDTLAIKQGRHPILERIVGQKPVSNNSYISEGSNFVII
TGPNMSGKSTYLKQVALCQIMAQIGSFVPADYAAFRIADQIFTRIGVDDDFETNSSTFML
EMKEISYIIHNVSDRSLIIIDELGRGTSAEEGIGICHSVCEFLLSLKAFTLFATHFLELC
QLESLYPNAENQHMEVQHTRSGDTGADSVVYTYLLNRGCSEESHYGLRAAEMTALPSNII
QEAKMIASKVSQQLWAKHHSDPETQRQRAVYKLATRLLQTARNSRLDRESLRMYLKGLKK
QYEAELLAAGQPAAIDTEEE
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtagcagcacagaggaggtaggcgacacctcgggatgtgggctcccgtggggg
gagtccccaatgggccgaagtcaacgcaatgaaacgacctcgtacggtcccgcgtcagtt
tcctccggttcatcccaccggggtttagaggaaggcagcgcaagctccggccacggctcg
tctctcccccaagtggcctcaggtccgtcccatcagagcttcaggtcgggcaggaattcc
tccctcgtgtttacctcggacagctcctccctgcgcagccgtggaggatcgccaaaacgc
cggtggacgccagcctttcccggggccactggcgcgcacccatcacgcacgccgttgacg
gaccacaccgcaacgagttgctcctcggcgaccacgacatccggggcctccgtgattgta
gcggtggttgaagggcgcggtttggctcggggagagattggcatggccagtctcaatttg
aattgtccagagctcgtactctcgcagttcgcagacaccgggacgtatgccaaggtcata
accaagattcacatatcggtgccactagaaatacttatgcctgacaccgccagtgagaag
gggaaagggacaaagctgttcagcttcatcacagagaacttcccgggagtagctttcact
gctatccaaaggaagtattttaatgagaggaaaggactggaatacatccagcagctgtgt
gctccagaatttggcactgtcctcatggaagtgcaagctaagtattattgcctcgcagca
gctgctgctttgctgaagtatttagaattcatccagaactccgtctacggcggcaagtct
ctcaaagtgatctttaaagggagtgagcagactgcgatgattgactcgacatctgcaatt
aacttggagttggttgtcaataacagagaccacaggagcgagcatactcttctcggggtt
cttaaccacaccaaaacaaccggcggtgcgagaaggttgcgctccaatatcctggagcct
ctcatcgatgtggacaccatcaacatgcgcttggacaccatacaggagctgctgcgggat
gaggagctcttcttcggcctgaaggacgccatagcgcatttcctcgacattgaccagctg
ctctcggttctagtccaaattccaaagcaggaaacggttcaggttgctgaagcaaaaatt
acacacgtcattcaactgaaacacacactggacctggtgccacggttacggatggtgttg
aagaactgcaatacagctctgctcaaggcatacagcaccgcactggaggacaacagattt
gatgtgatccttgagcagatcaagacggtgattaatgaggacattacctatctgaagggg
agcctgaacttgcgcacccagaagtgttacgctgtccgccccgacatcaacgagttcctg
gacattgcccgcagagcttacactgagatagtggacgacattgcagggctagtgagccag
atggcagagaaatatggttttccaatgcgtaccagctacagcacagctcgagggttcttc
attcaaatgaagctggagggagtggtcttacctgaagggaaactccccactgagtttatc
aaggtatcgaagaacaagaacaactacagcttcaccattgcagacctaatgaagatgaat
gaccgctgtgatgaggccctgagggagatctttcacatgtcctatgtggtgatgtgccaa
ctgcttagcactatccaccagcacatccactgcctttacaagctctcggatgccgtgtcc
atgctggacatgctgttgtcgctggccaatgtatgcaccatctcagactatgtgcgccct
gagttcacagacacactggccatcaagcagggtcgtcaccccatcctggagcggatagtt
ggacagaagcctgtgtcgaacaacagctacatctccgagggcagcaactttgtcatcatc
actggacccaacatgagcggcaaatccacctacctcaaacaggtggcgctgtgtcagatc
atggctcagataggctcctttgtgcccgctgattatgctgcttttcgtattgctgatcag
attttcaccagaataggcgtggatgatgattttgaaactaactcttccaccttcatgttg
gaaatgaaggagatctcttacataatccacaatgtaagtgaccggtccctgatcatcata
gacgagttggggcggggtaccagtgcggaggagggcatcggcatttgtcactccgtctgt
gagttcctccttagcctcaaggcgttcaccctgtttgccacacatttccttgagctgtgc
caactggagtctctatatcccaatgcggagaaccagcacatggaggttcagcacacacgc
agtggagacactggtgcagacagtgtggtgtatacatacttgctgaatcgtggatgctct
gaagaaagccactatggtctgagagcggccgaaatgacggcacttccctcaaacataatc
caagaggcaaagatgattgcctccaaagttagccagcagctttgggccaaacatcacagc
gatccagaaacacagaggcaaagagccgtgtacaagctggccacccgcctcctgcagact
gccaggaactccagactcgaccgtgaaagcttgcgcatgtacctgaagggcttgaagaag
cagtatgaggcggagctcctggcagcagggcagccggcggccatcgacacggaagaggaa
tga
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