Pseudoliparis swirei (Mariana hadal snailfish): 130201119
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Entry
130201119 CDS
T09868
Symbol
syne3
Name
(RefSeq) nesprin-3 isoform X1
KO
K21761
nesprin-3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130201119 (syne3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130201119 (syne3)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
LINC complex
130201119 (syne3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin_SYNE1_2
SYNE3
KASH
Spectrin_SYNE1
Motif
Other DBs
NCBI-GeneID:
130201119
NCBI-ProteinID:
XP_056281817
LinkDB
All DBs
Position
11:complement(5019292..5039146)
Genome browser
AA seq
1138 aa
AA seq
DB search
MTQQEFTQSLEAALSWMRAIQERLKASDNTQGPLEALEGRLRETEKIHQSEHEGRVKMDL
ALAAAELLLQSGDKELRTTTHSELRHLKGLWEETSTYIIHCHSRIEWVWLHWGEYLKAYE
EFETWLTSRRRGLDAAVELQLGVKEKLWQADQQRVALSDIQGQAALLERLLDEAAALHNR
TQDPGVEPRAQERLQEAYSDLRGRAQERLSLLQRVAEEHRTHRAAVHRFQSWLLSKTKEL
TDLLERKDTAESKLRALQVLDDSVAGEEKTLQHIEGVAEAVRGNTSPCGAEAVMEEAEEL
RLGWQRLRQGLWEAEEGLRCSLDSHSQYRARCQRLGEDIGRLRVLLQGLDQDLQEGLDQD
LEEGLDQNLEEGLDQNLEEGLDQDLQEGLDQNLEEGLDQDLAEGLDQNLEEPRDARGRTD
RTEEQMVGRWRKYSGVRNTLAGEESQVELLKAQLKELFRFSQDSRHLSDDVLAVVKEHQS
VKCRATRLCSESESGLRNLLQDPLLVFAQWSHMTSQVLEASAEVTDSSHIAMLVQGIERL
LKGSAPLQERLSLLQLKGDLLTSVFGAEASDCLQGELSAAARSRELLQAQLLQRKSRLQG
LISRTKDFGDAHDLMRSKLAALRRHLVATDGLQPDILAKKSQSDRFRVVLKDLEDCEAPV
TALETLASSSQSNRTQFQRLYAEWRELHQAARGKVQQSEESISHHESFHHRLLSTEEWLM
VTKQTLQSFHRPPGGWSAEGRQLEAESALGEFPEKELQLQQLEVQSQAVLDRTSEEGRVH
IQRDMKRLRESWLSLHTTSLHLHRLLDVSTGPSPGAGGPRSQGGRLRVASSGTSSGSGGA
GGGLEGAVAHGEGLLSLVGRGDEHAGPPFGGDHMDSSAWRVLSSQREATGSTDIDAPPGG
RASLASQPGDGEGLGRSSGGGVEAGGGLSPGGGAFMLFRRDRTKRPPTPTHHPAGFTGDH
QTRRRDFEAWLSKENSLLSGVSRSKGAALSAKEVQTRQDTLKALRAGLGWGQDQFQLLLQ
ESPGGEDVGLEEVRYRWMLYKSKLKDVGDLRARAKRLHAKQEESASAAKVQKLWWSSWQE
PGLCQRVCRLALPLWLLLLALLLLAFLLPFMDGSSCSLSNNYARSFSVMLRYEAPPPT
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagcaggagttcacgcagagcctggaggccgccctctcctggatgcgggccatc
caggagaggctgaaggccagtgacaacacccaggggcccctggaggccctggagggccgg
ctccgggagacggagaagatccatcagtcggagcacgagggccgtgtgaagatggacctg
gcgctggcggcggctgagctcctcctgcagagcggagacaaggagctgaggaccaccacc
cacagcgagctgagacacctgaaggggctgtgggaggagaccagcacctacatcatccac
tgccacagccgcatcgagtgggtgtggctccactggggcgagtacctgaaggcctacgag
gagtttgagacgtggctgacgagccggcggcgcggcctggacgcggcggtggagctccag
ctgggcgtgaaggagaagctgtggcaggcggaccagcagagggtcgcgctgagcgacatc
cagggccaggcggcgctgctggagcggctgctggacgaggcggccgcgctgcacaacaga
acccaggaccccggcgtggagccccgggcccaggagaggctgcaggaggcctacagcgac
ctgaggggccgggcccaggagcgcctctcgctgcttcagagggtcgccgaggagcaccgg
acgcaccgcgccgccgttcaccggttccagtcctggctgctgtcaaagaccaaggagctc
accgacctcctggagaggaaggacacggccgagagcaagctccgggccctgcaggttctg
gacgacagcgtggccggcgaggagaagaccctgcagcacatcgagggcgtggcggaggcg
gtgaggggcaacacctccccctgcggggcggaggcggtgatggaggaggccgaggagctg
aggctgggctggcagaggctgaggcagggcctgtgggaggcggaggagggcctgcgctgc
agcctggactcccacagccagtacagggcccggtgccagcggctgggagaagacatcggc
cgcctcagggtgctgctgcaggggctggaccaggacctgcaggagggtctggaccaggac
ctggaggagggcctggaccagaacctggaggagggcctggaccagaacctggaggagggc
ctggaccaggacctgcaggagggcctggaccagaacctggaggagggcctggaccaggac
ctggcggagggtctggaccagaacctggaggagccccgcgatgctcggggccgcaccgac
cggaccgaggagcagatggtgggccggtggaggaaatactcgggcgtgaggaacactctg
gccggggaggagtcccaggtggagctcctcaaggctcagctcaaggagctcttcaggttc
tcccaggactcgcgccacctttccgacgacgtcctggccgtggtcaaagagcatcagagt
gtgaagtgcagagcgacccggctgtgctccgagtccgagtcgggcctgaggaacctgctc
caggacccgctgctggtcttcgcccagtggagccacatgacctctcaggttctggaggcc
tccgccgaggtcactgactcctcccacatcgccatgctggtccagggcatcgagcgtttg
ctcaagggcagtgccccgctgcaggagcgcctcagcctgctgcagctgaagggcgacctg
ctgacctctgtgttcggcgccgaggcgtccgactgcctgcagggggagctgagcgccgcc
gccaggagccgagagctgctgcaggctcagctgctgcagaggaagagccggctgcagggc
ttgatctccaggaccaaggactttggcgacgcccacgatctgatgcgctccaagctggcc
gctctccggcgccacctggtggccaccgacggcctgcagcccgacatcctggccaagaag
agtcagtcggaccggttcagggtggtcctgaaggacctggaggactgtgaggcccccgtc
acggcgctggagacgctggcctcgtccagtcagagcaaccggactcagttccagaggctc
tacgccgagtggagagagctgcaccaggcagccagggggaaggtgcagcagagcgaggag
agcatctctcaccacgagagcttccaccaccgcctgctgagcaccgaggagtggctgatg
gtcaccaagcagacgctgcagtccttccaccgcccaccagggggctggagcgccgagggc
cggcagctcgaggctgagagcgctctgggggagttccctgagaaggagctgcagctgcag
cagctggaggtccagagccaggcggtgctggaccggacctccgaggaggggcgggtccac
atccagcgggacatgaagcgcctgagggagtcctggctgtccctgcacaccacgagtctc
cacctgcacaggctgctggacgtctccacggggcccagcccgggggcggggggccccagg
agccagggaggccgcctacgagtggcttcatccgggacgtcctccgggtctggaggggca
ggaggaggcctggagggggcggtggcccacggggagggtctcctcagtctggtcggacga
ggcgatgaacacgccggaccccccttcgggggagaccacatggattcctccgcttggagg
gttctcagcagccagagagaagccaccggaagcaccgacatcgacgcaccaccagggggc
agagcctcgctcgcctcacagcccggcgatggcgaggggctcgggaggagctctgggggg
ggcgtggaggccgggggggggctgagtccaggaggaggagccttcatgctgttcaggagg
gaccggaccaagagacccccaacaccaactcatcacccagcggggttcacaggagaccac
cagaccaggaggagggacttcgaggcctggctgtccaaagagaacagcctgctgtcaggg
gtctccagaagcaagggagcagccctcagcgccaaggaggtccagacccgacaggacacc
ctcaaggctctgagggccggactgggctggggtcaggaccagttccagctgctcctccag
gagagtccgggcggggaggacgtgggtctggaggaggtccgctaccgctggatgctctac
aagtccaagctgaaggacgtgggagacctccgggccagggccaagagactccacgccaaa
caagaggagtcggcctccgccgccaaagtgcaaaagttgtggtggtcgtcgtggcaggag
cccggcctgtgtcagcgggtgtgccggctggccctccccctgtggctcctcctcctggcg
ctcctcctcctggccttcctgctgcccttcatggacggaagcagctgctccctctccaac
aactacgcccggtccttcagcgtcatgctgcgctacgaggccccgccccccacatag
DBGET
integrated database retrieval system
