Pseudoliparis swirei (Mariana hadal snailfish): 130201436
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Entry
130201436 CDS
T09868
Symbol
rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130201436 (rpap1)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
130201436 (rpap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
CEP104-like_TOG
THOC2_N
Motif
Other DBs
NCBI-GeneID:
130201436
NCBI-ProteinID:
XP_056282420
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All DBs
Position
11:1742418..1758849
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AA seq
1411 aa
AA seq
DB search
MLQRPKPSDCEADLLREQEKFLASGEPAAANVIRRPDKRRGEAGGEEGGEHNRETEGRQR
DVVTIEDLPDQLPSLTPAPPKKSRFKAGHVTFEDEDAGERLDQHDMHVSAVLSRIVERDI
SSTPISLPDFTGMAFPKAMHRSETSSQAPPSSTVGKRSIFARQIAAQRLKEGKTPLHCAP
EAAHTPEHREQNLPPETNMDTDDQPTAVSCLSRLSGQGLGASGSSGEPMRIHRENQAKLQ
AMSQSEILQEQKKLLCQLDPRLVDFVRSRKAQSVPSSASAAKQPRGKSSQEDFPLENMSG
QSVSSGAAVPSQKPREVEMEREEEQPPPPAATEMDLLLKPQKEWVHMDKLEPEKLEWMRD
LPAPKRKGTKEAMQARFDFAGTVVPSTEDLPTHSSRRAGYSLQELFLLSRSQLIQQRSLA
LGTLSNILSKARVGEYSSALKGRVVSTLLDAGLLFLLRFALDDGVEGVMSAAVHALKALL
VCEEDEECLDCTFSWFRGLASFPLLPSAQEEEEEEEDAGLPENMKFTAKEKEERKSDHDV
ARQDVIKGLLKMKLLPRLRYILEVFRPSPRVVQDVLQILTRIARHSSSSATQVLECPRLM
ETVLSEFLPASWTAPSSSSPQSVYGLPLASAMKLLRVLATSGRHTCARLLNSLGVKERLP
CLLSTEPGELLLEPSEALRTTTEAYRLWAVAAGYGQACTLYIDLYPSLAKTLQSVHTAVA
LSHPLGPLQLQRVLALLSLLTQVTHTAGCHRELQAGMVSSQGEECPPPPPVSWGHVSGLQ
PSLLAHLRGFVKNLDNPVQKDLSLAVIPAYLIYLEAYYHQLSRQNCFKPVETLQELERLA
SEVLLPLLSHHVVQGLMKNLKSSSVVCNAEASHQDPETTPSLPGLACPGWRSRPGPVAPS
SPFPLLTALGLLLETITGIHKGLSSKFNGLLLAEPVIGYLRGCSQATPTLSHTRAWLVRH
EHHLLYLLLRLAHRLVSIEPEVAKHASLYHQVALVLLPWLLPGSEYLGHELLSTIIFNKD
FISEGHSGGPEAVELGELRLREETHHQPSPSLQTVGALLREACVQLPSIRGCFLTHLAHL
EASVLTSRDALLGRGPWISAHLLPELTGPTVPSDWPFLPLVSLYERTGLSDGGGLEVEAL
PHGALQAVTHCLQWVLLLEVWREEALKVILPVAKLARLSCVFLCSSDLFMERPVQKLIWG
LFRLLTRRSKLDPLDLDVPPPGLASFQDLYTALLSQYEAVSFGDRLFGCWVLLPLQRRYS
ATMRLAVFGEHVGMLRSLGVTLAQLSIPIERFTSPPEDSLPLLHLYFRSLVTGTLKPRWC
PVLYVVTLSHVNTFIFSQDAAAQEVEAARHSMLRKIYYLTDKVLRSHLLLFRLPQQHSES
GFDLYEQLPPIRERRLESVLKLQESRDGKAD
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagcgtcccaaaccatcagactgtgaggcagacctcctgagagagcaggagaag
tttctggcctccggtgaacctgccgctgccaatgtgatccgcagacctgacaagaggaga
ggcgaggctggaggagaagaaggaggggaacataacagagagactgaaggaagacagagg
gatgtcgtcacaatagaagatcttcctgaccaactcccgtctctgacgccagcccctcct
aagaagtctcgattcaaagccggtcatgttactttcgaggatgaggatgctggggagagg
ctggaccagcacgacatgcatgtcagcgctgttctctccagaatagttgagagggacatc
agctctactccaatatctctaccagattttacaggcatggctttccctaaagcaatgcac
cgttcagagaccagcagtcaggcgccaccgtcttccactgttggaaagaggagtatcttt
gcacgtcagatagcagctcagagactaaaggaaggaaagacaccgttacattgtgcacct
gaagctgctcacacacctgagcacagagagcagaacctgccacctgagaccaacatggat
acagatgatcagccaactgcagtttcatgtctcagccggctgtctggtcaggggctcggg
gcctcaggtagctcaggagaaccgatgaggatccacagggagaaccaagccaagctgcag
gccatgtctcagtctgagatactacaggagcagaagaagctcttatgtcagctcgatcct
agactagtggactttgttcgatctcgcaaagcccagagtgtcccgtcctccgcctccgca
gccaaacaaccccggggcaaaagcagccaggaggattttcctcttgaaaatatgagcgga
cagtcggtctcctctggtgctgctgtgccttctcagaaaccccgagaagtagagatggaa
agagaggaggagcagccaccgccacctgcagcgacagagatggacctgctgctgaagcct
cagaaagagtgggtccacatggataagctggagccagagaagctggagtggatgagagac
ttgcctgcacccaaaaggaaaggaaccaaggaggccatgcaggctcggtttgactttgcg
gggaccgtggttccttccactgaggatctgcccacacattcttcacgacgggcaggttac
tccctgcaggaactattcctgctgtctcggagtcagctcatccagcagaggagtctggct
ctcggcactctgtccaacatcctctcaaaggcacgtgttggggagtactcgtcagccctg
aagggcagggtggtgtccactctgctcgacgccggcctgctcttcctgctccgcttcgca
ctggacgacggcgtggagggagtcatgtctgccgctgtgcatgcactgaaagccctcctt
gtgtgtgaagaagatgaagagtgtttggactgcaccttctcttggtttcgcggccttgcc
tccttcccgctgctgccgtccgctcaggaggaagaggaagaagaggaggatgctgggctg
cccgaaaatatgaagtttacggcgaaggagaaggaggagaggaagagtgatcatgatgtg
gccaggcaggatgtgatcaagggtctgttgaagatgaaactgctccccaggctgcgttac
atcctcgaggtgttccgaccttctccccgagtcgtccaggacgtcctgcagatcttgacc
cgcatcgcgaggcactcttcctcatctgccacccaggtgctcgaatgtcctcgcttgatg
gagacggtgttgtcggagttccttccggcttcctggacggcgccatcttcctccagtcct
cagtctgtttacggactcccactggccagcgccatgaagctgttgagggtgttggccacc
tctggcagacacacctgtgccagactgttaaactctctgggcgtgaaggagcgtctgcct
tgcctgctgagcactgagcccggtgagctgctgctggaaccgagcgaggccctcaggacc
accaccgaggcctacaggctgtgggccgtggcggccggctatggacaggcctgcacacta
tacatagacttgtatccaagcttagcgaagaccttacagtcggtgcacacggccgtggcc
ctctcccatcctctggggcctctgcagctccagcgggtgctggctctgctttctctgctc
acgcaggtcacacacaccgctggctgccaccgggagctccaggctggcatggtcagctct
cagggggaagagtgccctcctcctcctccagtgtcttggggtcatgtctcagggttgcag
ccgtccttgttggcacatttgaggggctttgtgaagaacctggataatccagttcagaaa
gacctcagcctggctgtcataccagcgtacttgatctacctagaagcgtactaccatcag
ctctccagacagaactgtttcaagccagtggagacccttcaggaactggagcggctggcg
tccgaggttctcctccccctgctgtcccaccatgtggttcaaggcctgatgaagaaccta
aagtcttcctcagtggtgtgtaatgccgaggccagtcatcaggacccagaaaccactccc
agcctccctggtctggcctgcccagggtggaggagccgtccggggccggttgctccgagc
tcccccttccctcttctcacagccctcgggcttctcctggaaaccatcacaggcatccac
aaaggcctcagctccaagttcaacggcctcctcctggcagaacctgtgattggttacctg
agaggttgcagtcaggcgacgcccaccctgtctcacaccagagcctggctcgtccgtcat
gaacaccacctcctctacctgcttctccggctggcacacagactggtctccattgagcca
gaagtagccaagcacgcctcactgtaccaccaggtggcgctggttctgctaccatggttg
ttaccaggcagtgaatacctggggcacgaactgctctccaccatcatcttcaacaaagac
ttcatctcagagggccacagtggagggcctgaggctgtcgagctgggcgagctgagactc
cgagaggaaacgcaccaccagccctctccctccctgcagaccgtcggcgctctcctgaga
gaagcctgcgtccagctgccgtccatccgaggctgcttcctcactcacctggcccacctg
gaggcctccgttctgacgtcccgagacgctctcctcggccgcgggccctggatcagcgcc
cacctcctcccggagctcactggtcccaccgtgccatccgattggcctttcctcccactt
gtcagcctgtatgagcggacggggctgtccgacggcggcggcctggaggtggaagccctc
ccgcatggcgctctgcaggccgtgacccactgtctgcagtgggtgctgctgctggaggtc
tggagggaggaggcactaaaggtgatcctacctgtcgccaaactggcccgcctgtcctgt
gtgttcctgtgttccagtgacctgttcatggagaggcctgttcagaaactgatctggggt
ctgttcagactgctgaccaggcgatccaagctggacccgctggacctagacgtccctcct
cccggtttagcttccttccaggacctgtacacggcgctcttgtcccagtacgaagccgtg
tccttcggggaccggctgttcggctgctgggtgctcttacccttgcagaggaggtacagc
gccaccatgaggctggctgtgtttggagaacacgtgggaatgctgaggtcactgggggtc
accctggctcagctctccattcctatcgagcggttcacctccccccctgaagactccctc
cctctcctccacctctacttccgctcgttggtgacggggaccctgaagcctcgctggtgt
cccgtcttatacgtggtcactttgtctcacgtcaacactttcatcttctctcaggacgcg
gcagcgcaggaggttgaagcagctcgacacagtatgctgaggaagatttactacttgacc
gataaggtgttgaggagccacctgctgctcttccgtctcccacaacagcactcggagtct
ggctttgatttgtatgagcaactgcctccaatcagggagagacgtctggagagtgtcctg
aaactgcaggaaagcagggatggcaaagcagattga
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