Pseudoliparis swirei (Mariana hadal snailfish): 130201525
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Entry
130201525 CDS
T09868
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130201525 (srrm1)
03015 mRNA surveillance pathway
130201525 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130201525 (srrm1)
03041 Spliceosome [BR:
pswi03041
]
130201525 (srrm1)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130201525 (srrm1)
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
130201525 (srrm1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
130201525
NCBI-ProteinID:
XP_056282549
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All DBs
Position
11:complement(12143181..12154215)
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AA seq
863 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEVL
GFEDDVVIEFIFNQLEDKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLALLKKIDDDKKEKEMRERAQSKSPRRRKTRSPSPRRRSP
VKRERKRSASRSPRRKASPIGHTSPPPPLMQLPTKPLEQIVESETLDTALPEPVTLETPS
TCDTVLEVVNPDPVTEVKEASPEKTHKKEERPRSREREKDSRRERPHHRSRSHSRTRRRR
SRSRSYSPRRRQSPRRRMSPRRRSPPRRGLPNSRHRPRRSPVRRRRSRSASSSGSSSSNS
RSPKKAMKRISNTPPRKQVHQPDIPISPAVKDRRSPSPRARRGRGSASPARASGLKRKPG
GRGDSPSDNVKPRPSEGSESEEDKNEKGATADSVQQRRQYRRQNRQSSSDTGSSSSADEG
PKRAPAGPGAARNGEVRRRRSRTPSPRRRHRDASPRFLHGKRRSPSAGRRRRTPSPPRRR
RSPSPPRRRSPSPPPRRRSPSPRRFSPPIQRRYSPSPLPLQKRKLSSSPAKRSSPGAKRR
VSRSPKRRSPPPQRRRTPPSSSPSRHRRSPMLPSVRPSRDIRSPIASRPSPSPANRSRPV
RGSTSPQRRFETSSSSPSNQRRQQSPPHSGKPIRRVSRTPEPRNNQRPSPSPQPLRRAAS
RSRSASPQPAALKRPAPASASPSPSRSASGSPPPAKKASSASGSQSPNKTSDVDGSGKKK
KKKKEKKHKKDKKHKKHKKHKKEKSGGPVTGDGHENHGGEEDGESRKESDSEVDDSLDDL
EKHLREKALRSMRKAQLSPSQMS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggtacaagtgcggagcaagacaaccgtttcagcaacaag
cagaagaaactgctgaagcagctgaagtttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctagaagtgatcaaaccttggattactcagcgagtgaccgaggttctg
gggttcgaggatgacgttgtcatagagtttatatttaaccaacttgaggataagcacccg
gatagcaagatgatgcagatcaacctgacaggcttcttgaatggcaagaatgcccgagag
ttcatgagggacctgtggccccttctgctgagtgcccaggagaacattgctggcatcccg
tctgcttttctggaacagaagaaggaggaaattaaacaaagacagattgaacaggaaaag
ctagctttactgaagaagatcgatgatgataagaaggaaaaggaaatgagagagagggct
cagtcaaaaagcccaaggaggcggaagacacggtcaccatcaccacggcgaaggtcgcca
gtgaagcgggaaaggaagcgaagcgcatcccgctccccaagacgcaaagccagcccaatt
ggccacacctcaccccctccacctctgatgcagctgcccacgaaacctttggagcagatt
gtggagtcagaaacgttagacacagccctgccagagccagtcaccctagaaactccttct
acctgtgacacagttttggaggtggtgaatccagacccagtgactgaagtcaaagaagct
tcaccagagaagactcataagaaagaggagaggcccaggtctcgggagagagagaaggac
agcaggagggaaagacctcaccaccgctctcgttctcattcccgcactcgcaggcgacgc
tcccgttctcgatcttactcccctcgtagaaggcagagtcccagaaggaggatgtctcct
cgtcgaaggagcccccccagacggggcctccccaactccagacacagacctaggcgctcc
cctgtccgcaggaggcgctctcgatctgcttcctcctctggcagcagctcctccaactct
cgctcgcctaagaaagctatgaaaagaatatctaacacaccaccccgaaaacaagtccat
cagcctgacatccccattagccccgcagtgaaggacaggcggtccccatctccacgggcc
agaaggggcaggggctctgcgtcacccgccagagcatctggtttaaagcgaaaaccagga
ggaaggggtgattctccatctgataatgtgaagcccagaccgtctgaagggtctgagtca
gaggaggataaaaatgagaaaggggcaacggcagattcggtgcagcagcggcgtcagtat
cgcaggcagaatcgacagtcttcttcagatacagggtcttcctcctccgcagatgaggga
cccaagagggcaccagcagggccaggtgccgccagaaatggggaagtcaggaggagacgc
agccgtacaccctccccacggaggcgacacagagatgcttcgccaaggttcctacatggg
aaaagacgttctccatctgctggacgcagacgtcgcacaccgtctcccccacgccgtcgc
agatctccctctcctcctagaagaaggtctccttccccaccgccccgtcgtcgttctcca
tcccccagacgattttctccccctatccagcgtcgctacagcccctccccgttgcctcta
cagaagaggaagctgtctagctctcccgcgaagcgctcttctccgggggccaagcgccgc
gtctcaaggtcgcccaagcgcagaagtcctcctcctcaaaggagacgcacacctccctcc
tcctctccatccagacacaggaggagccccatgttgccttccgtcaggccaagcagggat
atacgatcccctattgccagccgcccctctccgtcccctgcaaaccgcagtcgccccgtt
aggggttccaccagtcctcaaaggcgttttgaaacctccagttcatccccgtctaaccag
cggagacagcagtcccctccacacagtggcaagcccatccgcagagtgtcccgcacccca
gagccacgcaacaaccagagaccatctccaagtccccagcctctgaggagagcagcctcc
aggtcccgatctgcttccccccagccagcagctctgaaacgtccggcccctgcatctgcc
tccccctcgccatctcgctcagccagtgggtccccaccaccggccaaaaaagccagcagt
gcttccggcagtcaatccccaaacaagacttcagatgttgatggcagtggaaagaagaag
aagaaaaagaaggaaaaaaagcataagaaagacaagaagcacaagaaacacaagaaacac
aagaaggagaagagtggcggccccgtgactggagatggacacgaaaaccacggtggggag
gaggatggagagtcaagaaaggaatcagacagtgaagtagacgacagcttggatgacctg
gagaaacacctacgagaaaaggccctgcggtccatgaggaaggcccagttatctccatca
cagatgtcctga
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