Pseudoliparis swirei (Mariana hadal snailfish): 130201543
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Entry
130201543 CDS
T09868
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03015
mRNA surveillance pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130201543 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
130201543 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130201543 (pabpc4)
03041 Spliceosome [BR:
pswi03041
]
130201543 (pabpc4)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130201543 (pabpc4)
mRNA cycle factors
Stress granule specific factors
130201543 (pabpc4)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
Complex C specific factors
130201543 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_7
RRM_occluded
RBD_RDR6
ApbA_C
Motif
Other DBs
NCBI-GeneID:
130201543
NCBI-ProteinID:
XP_056282574
LinkDB
All DBs
Position
11:12197745..12205824
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AA seq
629 aa
AA seq
DB search
MSTETGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDEMTDDQLKELFDKYGKTLSVKVMIDPSGKSRGFGFISYEK
HEDANQAVEDMNGMDLNGKSVFVGRAQKKMERQAELKRKFEVLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMVDEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAVPANAIINQFQPASGYFMPAVPQQAQNRT
TYYAPNQLAQIRPNPRWQQQGGRGQGGYQGIPNSLRQPGPRANLRHMSPGGGAQGPRASG
QAMAPRPSMGVPGGPRAMPPYKYATGVRNPNPQGMQPNALQQAQPAVHIQGQEPLTASML
AAAPPQEQKQMLGERLFPLIQSMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEA
VAVLQAHQAKKDATQKVGSIAATVAAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagagaccgggagttatccgatggcttccctctacgtgggagacctgcacccc
gatatcacggaggctatgctgtatgagaaattcagcccagccggaccggtgctctccatt
cgggtgtgccgcgacatgatcacccggcggtctctcggttacgcctatgtgaacttctct
cagcccgctgacgctgagagagccctggacaccatgaacttcgacgtggtgaaagggaag
cccatcagaatcatgtggtcccaacgagacccctccctcaggaaatctggagtgggcaac
gtgttcatcaagaacctggacaagtccattgacaacaaagccctgtacgacaccttctct
gcctttggcaacatcctctcctgcaaggtggtgtgtgatgaaaatggctccaagggctac
gccttcgtccactttgagacccaggatgccgccgaccgtgccattgagaagatgaacggc
atgcttctgaatgaccgcaaggtgtttgtgggccgtttcaaatctcgcaaggaacgggag
gctgagcttggtgccaaagccaaggagttcaccaacgtctacattaagaactttggagac
gagatgactgacgaccagctgaaggagctctttgacaaatatggtaaaacactcagtgtg
aaggtgatgatagaccccagtggaaaatccagaggctttggcttcattagttacgagaaa
cacgaggacgctaaccaggctgtagaggacatgaatggcatggacctcaacggcaagtct
gtgtttgtgggccgggctcagaagaagatggagcggcaggcggagctgaagaggaagttt
gaggtgctgaaacaagagaggatcagccgttatcagggtgttaatctttacatcaagaac
ctggatgacaccatcgatgatgagaagctgcgcaaggagttctctcctttcggctctata
accagtgcgaaggtcatggtagatgagggtcgctccaagggcttcggctttgtctgcttc
tcctcccccgaagaggccaccaaggccgtgactgagatgaacggacgcatcgtgggctcc
aaaccgctctacgtggctctcgctcagcgcaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgcattgccggcatgagggccgtgccggctaacgccatcatcaaccag
ttccagcccgccagcggctacttcatgccagcagtgcctcagcaggcccagaacaggacg
acatactatgcacccaatcagctggctcaaatacgacccaacccccgatggcagcagcaa
gggggcagaggtcaaggtggttaccaagggatacccaactcgctgcgtcagccaggaccc
cgcgccaacctgaggcacatgagtcctggtggcggtgcacagggcccacgagcctccggc
caggccatggctcctcgcccttcaatgggagtccccggcggcccccgggccatgcctcct
tacaaatatgccactggtgtccgtaaccccaacccccaggggatgcaacctaatgcctta
cagcaggctcagccagccgtgcatattcagggccaggagcctctcacggcctccatgctg
gctgctgcgccccctcaggagcagaaacagatgcttggtgagcgtcttttcccgctgatt
cagtccatgcatgccaacttggcaggaaagatcaccggcatgttgctggagattgacaac
tctgaactgctgcatatgctcgagtcccatgagtctctgcgctcaaaggtggaagaagct
gtcgccgtgctgcaagcccaccaggcaaagaaagatgccactcaaaaagtgggcagcata
gctgcgactgttgctgctgccacgtcctga
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