Pseudoliparis swirei (Mariana hadal snailfish): 130201544
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Entry
130201544 CDS
T09868
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
pswi03083
Polycomb repressive complex
pswi04110
Cell cycle
pswi04330
Notch signaling pathway
pswi04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130201544
03083 Polycomb repressive complex
130201544
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
130201544
04350 TGF-beta signaling pathway
130201544
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
130201544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130201544
Enzymes [BR:
pswi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130201544
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
130201544
HDAC complexes
Sin3A-HDAC complex
130201544
BRAF-HDAC complex
130201544
REST complex
130201544
SHIP complex
130201544
MiDAC complex
130201544
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
130201544
Heterochromatin formation proteins
Other heterochromatin formation proteins
130201544
Chromatin remodeling factors
NuRD complex
130201544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
130201544
NCBI-ProteinID:
XP_056282576
LinkDB
All DBs
Position
11:12185932..12190505
Genome browser
AA seq
492 aa
AA seq
DB search
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSGGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFRPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKCFNLPLLMLG
GGGYTIRNVARCWTYETAVALDTSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEEDVNKRISIRAHDKRIACEE
EFSDSEDEGEGGRRNVSSFRKSKRAKTEVEKEGDEKEKKSEEETTKEVKEEEKVPEEEKM
DTSKPKEESKTP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagttcccaaggaacaaagaaaaaagtttgctactactacgacggtgatgtt
ggaaattattactatggccagggtcaccccatgaagccccaccgcatccgtatgacccac
aacctgttgctcaactatgggctctacagaaagatggagatctatcgtccgcacaaagcc
agcggagaggagatgaccaagtatcacagcgacgactacatcaagttcctgcgttcaatt
cgaccggacaacatgtcagagtacagcaaacaaatgcagagatttaatgtgggagaggac
tgtccagtgtttgatggtttatttgagttctgccagctctcaggaggaggctccgttgcc
ggtgcggtgaagttgaacaaacagcagacggacatcgccatcaactgggccggaggcctg
catcacgcaaagaagtccgaggcttctgggttttgctacgtcaacgacatcgtcctcgct
attctggagttactgaaataccaccagagagttctgtacatagacattgacatccatcat
ggagacggcgtggaggaagccttctacaccaccgaccgcgtcatgactgtgtccttccac
aagtacggggagtacttccccggtacaggcgacctgagggacatcggtgccggaaagggc
aaatattacgctgtgaattacccactgagggacggcattgacgacgagtcgtatgaagct
atcttcagacctatcatggccaaggtgatggagatgtaccaacccagcgcagtggtcctg
cagtgtggagccgattctctgtcaggggaccggctcggttgctttaacctcaccattaaa
ggccatgccaagtgtgtggagtacatgaagtgtttcaacctgccactgctcatgctgggc
ggaggaggctacaccatccgtaatgtggcccgctgctggacatacgagacggctgtagcc
ctcgacacctccatccccaacgagctcccatacaatgactactttgagtacttcggacca
gacttcaagctgcacatcagtccctccaacatgaccaatcagaacaccaacgactacctg
gagaaaatcaagcagcgcttgtttgagaacttgcgcatgctgccacacgccccgggagtc
caaatgcaggccatccccgaggacgctgtacaggaggacagcggtgacgaggaggaggag
gaggacgtcaacaaacgcatctccatccgcgctcatgacaagaggatagcgtgcgaggag
gagttctctgactcggaggatgaaggcgaaggaggccgcagaaacgtatccagcttcagg
aaatccaagcgagccaaaaccgaagttgagaaggagggagacgaaaaggagaagaaaagt
gaggaggagacgacaaaagaagtaaaggaagaagagaaggtgccagaggaagagaaaatg
gacacctcaaagccaaaagaggagtccaagaccccgtga
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