Pseudoliparis swirei (Mariana hadal snailfish): 130201793
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Entry
130201793 CDS
T09868
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130201793
04091 Lectins [BR:
pswi04091
]
130201793
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
130201793
Lectins [BR:
pswi04091
]
C-Type lectins
Others
130201793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
GPS
Lectin_C
QcrA_N
DUF1757
Motif
Other DBs
NCBI-GeneID:
130201793
NCBI-ProteinID:
XP_056282888
LinkDB
All DBs
Position
2:complement(5463835..5503544)
Genome browser
AA seq
2013 aa
AA seq
DB search
MRWTFVHLLMLPTLVCPSCAAVEANVPASCPEHQRAFGGSCYEFVDLRHSFVSAQARCEQ
RGGHLAFIHDEETQHFLQRLSDPEKDVWLGLAPDATLNLRHYATPEAHCHGRQVCQVAAV
VDSLVEPCPQSYLSVDHHCTDGLTLSVSAVAAVFDDVTISVAWLLRETQGTPSCKISTGD
GRVVYLRSPEGLESSEVHRYTHPGTFVVAVECGTGSGVHVAAQSTIAIQEPITVFGGVRC
FAGGRRSFQANGCQTLQGEALLIEMAVKAGSNVNYRIQRDDTLLLGSSVFRGNVPENISV
TPEAMQRLGPGCHRLTLYASNMVTEREVCTHLQVCVLERVGGLRASVSPEGGDHLRSPGL
TVGVSLDRGAPVLLLFSLTGDNSSHYDTREMKTGEGVFHLANPIQGPVRVKLRAWNDLSS
LEVEVLAFCGEDPVKDFTATSTSSIQDVQASVENTVVQLKKQGLLLGETVGPLVSSVSNK
LNEESDELNRDMRQKLRETLLEILIDTVKEAPPKTPEVVHVIAKALAALVQKGTELSTSA
QVEASLLFVNLSSNLLDIDVNNDNVNKVHAAASSIVEGASNILDYSSDKSISDALLLSLS
NTQSVLLGYIETNKAPTIIKQANVCVLVNRVTPGRLHTEALNIPNRSTVTFSLPTLLSRI
LPSDEPVDIRMLTLEKKAFSWHERGDISGKIGALSLSREDGSNISLENLSEDIEIRIPRP
DGERVKATFLDLGNYSTTVINIPSGNNTLVLKMVPSKDPLPFKLYLGHMDYPTETNHVAM
TEMPHQGATQEERYTWLLNATDLKGSNGVHYLVVRPIVGPGIKSINATLSITSFTAACKF
WNESVLEWETFGCRIGVQTTPLVTQCLCNHLTFFGDSFFVTPNLVDASRTAELFATFGEN
PVVVCFVGSIVVAYLLVVVWARRKDIHDTAKVKVTVLDDNDPSDEYRYLLSVSTGHRRGA
STSSQVTITLLGAEGTSEPHHLAAPKKCLFERGAVDVFLLTTPFSLGDLQSIRLWHNNSG
SHPAWFVGNVMVHDLHTEQKWHFLCNSWLAIDIGDGSLDKVVPVATETDLKRFSNLFFMK
TAKDFSDGHLWYSVVNRPPSSTFTCVQRVSCCFALLLCTMLTSIMFYGIPTDPSDQTMDL
GQFEFTWQQFMVGVQSSLIMFPINILIVTIFRNSRPRETSCCRRKAKKQNSFSPTTTTTN
VNVSLDTVIKTMKSNIPSTECEFGPGQQVDINAVLSAVEDFIKLNNKTIDAAQPKTPPEG
SPGSTVEANQKKSNKSLYLYQQLCHVDKELSQLGPSGFPSPQSHSRALQQIQTIKGCLEQ
QLFKVGCVKPDELTQNKWSPADSIDGDGGQKKKGCCHGGLPWWFVFVGWLLVFASSFVSG
YYTMLYGLKFGKDRSVSWLVSMIISFFQSVLVLQPLKMLCLALFFALVIKKVDEDDFQNM
EFERNLETNNSSPTGDSKEQQTVTRDHSLYEPPPAADIEAMRRKQIMQQKAFALLKEILT
YMGFMWMLLLVAYGQRDPNAFFLNRHIRDSFIGKTSTSKSLKEVFTWANTSLLSNLFGVY
QGYITDGNSKLVGKARLRQLRVLNDSCQIATPMLQFAPDCNALYSWEVEDMGSYETGWNR
SERNNTSPSTSSPWTYQTQSQLRAYPIWGKMVLYRGGGYVAELGPDLQDARSTLESLFRN
TWLDVYTRAVFAEFTVYNANVNLFCIVTLLLETTAVGAFQFHSELRSVRLYQSTGGLYIF
VMAAEITYLLFILYYMFLQGKLMRRQRWAYFRGKWNLLQLTIIILSWSAVGVFIKRTLLG
NRDMTYYQNHKDQFASFYETAIADSVLQYLIAFLVLLATFQMWHLLRLNPKMNVITAALQ
RAWNDIASFLVVIVIMLVAYSVASNVIYGWKISSYRTLIDALLTVISMQIGMFNYAEVLD
DTPVLGGLLFGSCVVLMTYVVLNLLLSVILVAFHEEQIHHKPSDEEEIVDLLLENICSLF
GIRYKGTKDARGPEVNEEAGATPTRSSNTPNNA
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggacgtttgtccacctgctgatgctgccgacactcgtctgtccgtcttgcgct
gcggtcgaggcgaatgttcccgccagctgcccggagcaccagagggccttcggcggctcc
tgctacgagtttgtggatctccggcatagtttcgtcagtgcacaggctcggtgcgagcag
cgcggtggacacctggcgttcatccacgatgaagaaactcaacatttccttcagagactc
tcggaccccgagaaggatgtgtggctcggactggcacccgacgccactctgaacttacga
cattatgcaacccctgaagctcactgccacggccggcaggtgtgccaggttgctgcagtg
gtggactccctggttgagccgtgtcctcagagctacctgtctgtggaccaccactgcaca
gacgggctcacgctgtcagtgagcgccgtggcagctgtttttgacgacgtcaccatcagc
gtggcgtggctcttacgtgagactcagggaacgcccagctgcaagatcagtaccggagac
ggacgagttgtttacctgcgcagtccagaggggttggagagcagcgaggtgcacaggtat
actcacccgggcacatttgttgtggcggtcgaatgcggcaccggcagcggcgttcacgtg
gcggctcagagcacgatcgccatccaagaacccatcacggtgttcggtggcgtccggtgc
ttcgccgggggccgccggtcctttcaggccaacggctgccagaccctccagggagaggcg
cttctcattgaaatggcggtgaaggcaggttcaaacgtgaactacagaatccagagggat
gacacgttgttgctgggttcctccgtatttagaggaaatgttcccgagaacatctccgtg
actccagaggcgatgcagcggctcgggcccggctgccaccggctgaccctctacgcatcc
aacatggtcacggagcgggaggtgtgcacacacctgcaggtgtgtgtgttggagagggta
ggcgggctccgggcctccgtgtctccagaggggggggatcatctccgctctccgggtctg
actgtcggtgtttccctggaccgcggggcgccggtgctgctcctcttctctctgaccgga
gacaacagctcgcactacgacaccagagaaatgaaaacaggcgagggcgtctttcatctt
gcgaatccaattcaaggacccgtacgtgtgaaactcagagcgtggaacgacctctcctct
ctggaagtggaagtgttggctttctgtggcgaagatccggtgaaggatttcactgcaacc
tcgacctcttcaattcaggatgttcaggcttctgtggagaataccgtggttcagctaaag
aagcaaggtcttctgttaggagaaactgtgggaccactcgtcagttctgtgtccaataaa
ctgaatgaggaatcggatgaattgaacagagacatgaggcaaaagcttcgggagacgctg
ctggagatattgattgacacagtaaaagaagctccgcccaaaactccagaagtagttcac
gtgatagccaaagctcttgctgctctcgtccagaagggcactgagctcagcacctctgcc
caggtagaggcttctctcctctttgtaaacctgagctcaaatctgctcgacatagacgtg
aacaatgacaacgtgaataaagttcacgctgcagccagcagcatcgtggagggtgcaagc
aacatcctggactattcttccgacaaaagcatctccgatgcccttctcctgtctctgagc
aatacacagagtgtactgttggggtatatagaaaccaacaaagcgccaaccatcatcaaa
caagctaacgtttgtgtgcttgtaaatagagtgacaccgggaagattacacacagaggct
ctgaatattcccaaccgttccaccgtcacattttctctcccaacactactctctcgtata
ttaccttcagacgaaccagtggatatacgaatgctgactttagaaaaaaaagcattttcc
tggcatgagagaggggacattagtggcaaaatcggtgctctctccctctcaagagaagat
ggctccaatatctctttggagaacctgagcgaggacattgagattcgcataccgaggcct
gatggagagcgggtgaaagccacttttttggatctggggaactacagcacgacagtcata
aacattccttcaggcaacaacacgctggtgttaaagatggtgccttcgaaagatccttta
cccttcaaactgtacctcggtcacatggactaccccactgaaaccaatcatgttgcaatg
acagagatgcctcaccagggagcaacacaagaggagagatatacttggctactcaacgcg
acggatttaaagggaagcaatggagtgcactaccttgtggtgaggcccattgtcggtcca
ggtataaaatccatcaatgccacattatcaataacctccttcactgctgcatgtaaattc
tggaatgaatcagtattggagtgggaaacttttggatgcaggatcggtgttcagaccaca
cctttagtcacccagtgtctctgcaaccacctcaccttcttcggggactctttcttcgtc
actcccaacctcgtcgacgcgtcacgcaccgctgagctgtttgcgactttcggtgaaaac
cctgtggtggtctgctttgtagggtccatcgttgtggcctatctcttggtggttgtgtgg
gcgcgacggaaagacatccatgacaccgccaaggtgaaggtgaccgtgctggacgacaac
gacccgtcagacgagtaccgctacctgttgagtgtcagcaccggacatcggagaggagcc
tccacttcctcccaggtgacgatcactctgctgggtgcagagggaaccagtgaaccgcat
cacctggcggctccgaagaagtgtttgtttgagaggggtgcggtggatgtgttcctgctg
acgacgcccttctccctgggagacctgcagagcatcagactgtggcacaacaactcaggg
agccatcctgcctggtttgttggcaacgtcatggtccatgatctacacacagagcagaaa
tggcattttctatgcaactcctggctggccatcgacatcggcgatggttccctcgataag
gtcgttcctgttgccacggagacggacttgaagaggttcagtaacttgttcttcatgaag
accgcaaaggacttcagcgacggacacctctggtactctgtggtcaatcgccccccgagc
agcaccttcacttgtgtccagagggtttcctgctgctttgcactgctgctctgcaccatg
ctgaccagcatcatgttctacggcatcccaacagacccctcggaccagaccatggacctg
ggtcaatttgagtttacctggcagcagttcatggtcggagttcagagttccctcatcatg
tttcccataaatatccttatcgttaccatctttagaaactcgcgtcctcgagagacgtct
tgttgcaggcgaaaagccaaaaaacagaattctttctcaccgacgaccaccaccacgaat
gttaatgtatctctagataccgtcattaagaccatgaaaagcaacataccgagcacagag
tgtgagtttgggcctggacaacaagtcgatatcaacgctgttctgtccgcggtggaggac
ttcatcaaactcaataacaaaaccattgacgcagcccagcccaaaacgccaccagagggc
agtcctgggtcaacagtggaggcgaatcaaaagaagagcaacaaaagcctgtatctgtac
cagcagctgtgccacgtggacaaagagctgagccagctggggccctcgggcttccccagc
ccacagagccacagccgggccctgcaacagatccagaccatcaagggctgcctcgaacaa
cagctcttcaaagtcggctgcgtcaaaccagatgaactcacccagaacaagtggagccct
gccgacagcatcgatggggacggcgggcagaagaagaagggctgctgtcacggagggctg
ccctggtggtttgtgttcgtgggctggctgctagtattcgccagcagcttcgtatcggga
tattatacgatgctttacgggctgaaatttgggaaggatcgctccgtgagctggttggtg
tccatgattatctcctttttccagagtgtcctcgtcctgcagccattgaagatgttatgt
ctcgcactcttctttgcacttgtgataaagaaagtcgatgaggacgatttccaaaatatg
gagtttgaaagaaatctagagacgaataactcttcacccacaggtgacagtaaggagcaa
cagacggtcacacgggatcacagcctctacgagcctcctcctgctgcagacatcgaggcg
atgaggaggaaacagatcatgcaacagaaagcctttgccctcctcaaagagatattgacc
tacatggggttcatgtggatgctgctgctggtggcgtacggccagagagatcccaacgcg
tttttcctgaaccgtcacatccgggatagtttcattggcaagacctcaaccagcaagagt
cttaaagaagtgttcacctgggccaacacgtctctattaagtaacctttttggagtttat
caaggatacatcacggatggaaactccaagctcgtgggcaaagctcgtcttcgtcaactg
agagtgctgaatgactcgtgtcagattgcaacccctatgctccagtttgcaccagactgt
aacgctctatattcgtgggaggtggaggacatgggctcctatgagactggctggaaccgc
tctgagaggaacaatacctctccgagcacatccagcccgtggacgtaccagacacagtct
cagctcagggcttatcccatctggggcaaaatggtgctctacaggggaggtggctacgta
gcggagctcggcccggatctacaagatgccagaagcaccctggagtccctgttcaggaat
acctggctggacgtgtacacaagggcggtctttgccgagttcaccgtttataatgctaac
gtgaacctcttctgcatcgtcaccctcttgctggagaccacggctgtaggagcttttcag
ttccacagcgagctgcggagcgttcgtctttaccaatccaccggtgggctctacatcttc
gttatggcagctgagatcacatacctgcttttcatcctctattacatgttcctgcagggc
aaattaatgcgtcggcagcgctgggcttacttcaggggcaagtggaacctccttcagctg
accatcatcatactgagctggagtgccgtgggggtcttcatcaagaggaccctgctcggg
aaccgcgatatgacctactaccagaaccacaaggaccaatttgccagtttttacgagacg
gccatagcggactcggtgctccagtatctgatcgccttcttggtcctgctggccaccttc
caaatgtggcacctgctcagactgaaccccaagatgaacgtgatcaccgccgcactgcag
cgggcctggaacgacatagcctcttttcttgtggtcattgtgatcatgttggtggcgtat
tccgttgcgtccaacgtgatctatggctggaagatctcctcctacagaactttgattgat
gctctcctcaccgtcatcagtatgcagataggcatgttcaactatgcggaggtcttggac
gacacccccgtgctcggcgggttgctgttcggttcctgcgtcgtgttgatgacgtacgtg
gtgctcaatctgctcctctcggtgatcctggtggcgttccacgaggagcaaatacatcac
aagccctcagatgaagaggagatcgttgacctgttgctggagaatatctgcagtcttttt
gggatcagatataaaggcacaaaagacgcccgggggccggaagtgaacgaggaggcgggc
gccaccccgactagaagcagcaatacgcctaacaatgcctag
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