Pseudoliparis swirei (Mariana hadal snailfish): 130201801
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Entry
130201801 CDS
T09868
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130201801 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130201801 (cnot3b)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130201801 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130201801 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
130201801
NCBI-ProteinID:
XP_056282937
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All DBs
Position
1:complement(20042462..20059794)
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AA seq
976 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLALKVDPAQKE
KEEVGMWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKERSYRSPAEAAFMNQDRIEE
LKKFIEKHRHHIRMLETILRMLDNDSVQVDSIRKIKDDVEYYLDSSQDPDFEENEFLYDD
LDLDDIPLALVATSPPGNSQLEDEIFQNSSSTPNSTTSSSPIPPSPATCTTENSEDDKKR
GRSTDSEVGQSPVKNGNPSSSLSSSSSSSSSSSSSSSSSSCSVSGLTPSSLVSMVAIAGG
GVLGGGCGGAGHLGGGLGGLLSNTSAGSYSNATQQPPHPSAQQQQQQVKNLVGTSSSAPI
SIPMSSGNSHLASSSSSPPNAITQGLFTAMSQPQAMSGSTPASNSLSLGLSLGKGGMSAG
GPMSGGLGLSGMPASLSNMASLLSGSTPAPYAQAASSSGAIGSGLPGSLGGVGINPTTAN
SSAGSIGSGSVAVGGPTASSVGGPTASSAGGLLGPAPGLPGIGSGILGLSSGQSGMQGSS
LMSLSPVGGLAPGGGVGVIGVIGSGGGSGTGGSGGMGGGISLSGRPASQQKQNGSTSYSA
VLGDSATDSALTSASQSQSSQPLTSSANQPSPSLSSRLLSKETGSSLLGSICLSASSPSA
AFYSEAKAASGGLLNGPLSYSQSSDGVKPMEPLSSLKSMAERAALGSGMEGDVPSLHLTP
VSVSRLSSDIFPSSAVTPSGPPAAAAPQLSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAM
EEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHNQVPPPHSDTVEFYQRLSTETLFFIFYY
LEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKK
EGFTFEYRYLEDRDLQ
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaactccaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggagttgaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgcgaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctgcagcgtctccgagac
cagatcaagacgtgggtagcctccaacgagatcaaagacaaacggcagctagtggagaac
cgcaaactcatagaaacgcaaatggagcggttcaagatcgtggagcgggagacgaagacg
aaggcgtactccaaagaaggtctgggtctggccctgaaggtggacccggcccagaaggag
aaggaggaggtcggcatgtggctgacgaatacgatcgacacgttgaacatgcaggtggac
cagtttgagagcgaggtggagtccctgtcggtccagacgaggaagaagaaaggagacaaa
gagagaagttaccggagtcctgctgaggcggcgtttatgaaccaggaccggatcgaggag
ctgaagaagttcattgagaagcaccggcaccacatccggatgctggagaccatcctgagg
atgctggacaacgactcggtgcaggtggactccatcaggaagatcaaggacgacgtggag
tattatctggactcgtcgcaggatccagactttgaggagaacgagtttctgtacgacgac
ctggacctggacgacatccctctggctctggtcgccacctctccgccggggaactcgcag
ttggaggacgagatcttccagaactcgagcagcacgccgaactccaccacgtcatcctcg
cccatcccgccgtcgcccgccacctgcacgacggagaactcggaagacgacaagaagagg
ggacggtcaacggacagcgaagtcggtcagtcaccggtgaagaacgggaacccgtcttcc
tcgctgtcctcctcttcctcctcctcctcttcctcctcctcctcttcctcgtcgtcctcg
tgctctgtgtccggcctgacgccgtcctcgctcgtctcgatggtggccatcgccggagga
ggggtgctcggcggcggctgcgggggcgccggtcacctcggcggcggcctggggggtctc
ctctctaacacgtcggccggcagctacagcaacgccacgcagcagccgccgcacccgtcg
gcgcaacaacaacaacaacaggtcaaaaacttagtgggcacctcctcctcggcgcccatc
tccatccccatgtcctccggcaacagccacctggcgtcctcgtcctcctcgccgcccaac
gccatcacacaggggctcttcaccgccatgtcgcagcctcaggcgatgtcgggctccacg
ccggcctccaacagcctcagcctggggctgtcgctggggaagggcggcatgtcggccggc
ggcccgatgtcgggcggcctgggcctgtcggggatgccggcgtccctgagcaacatggcg
agcctcctgtccggctccaccccggcgccctacgctcaggcggcgtcctcctcgggggcg
atcggctccggcctgccgggctcgctgggcggcgtcggcatcaaccccacgaccgccaac
agctcggccggctccatcggcagcgggagcgtcgcggtcggtgggccgacggcgtcctcc
gtcggcgggccgacggcgtcctccgccggcggactgctgggcccggcgccggggctgccc
ggcatcgggtcggggatcctgggtctgagctccggccagtcggggatgcagggctcctcc
ctcatgtcgctgagccccgtcggcggcctggcgccgggcggcggcgtcggggtcatcggg
gtcatcgggagcggcggcggctcggggacgggagggagcggcgggatgggcggcggcatt
tcgctctccggccggccggcgagccagcagaagcagaacggtagcaccagttacagcgct
gtgttaggagacagcgccacagactccgccctcaccagtgccagccaatcacagagcagc
cagcccctgacctcctcagccaatcagccttctccctctctctcgtcccgtctcctcagt
aaggaaactggctccagcctcctgggctccatctgcctgtcggccagctcgccgtcggcc
gccttctacagcgaggccaaggcggcgagcggcggcctgctgaacgggccgctgtcgtac
tcgcagtcctccgacggggtcaagccaatggagcctctcagcagcctgaagtccatggcc
gagcgagcggcactcggctcggggatggagggagacgtgccctccttgcacctcacccca
gtctccgtctcccggctctcttcggacatctttcccagcagcgccgtgacgccctcgggc
cccccggcggcggcggcgccgcagctctccttgtcggaggtcagcatccccccgtcactg
ggggtctgccccctgggcccggtgcccctgtccaaggaccagctgtaccagcaggccatg
gaggaggcggcctggacccacatgccccacccctccgactccgagagaatcaggcagtac
ctgatgaggaacccctgccccacgctgcctttccacaaccaggtgccgccgcctcactcc
gacaccgtggagttctaccagaggctctccacggagaccctgttcttcatcttctactac
ctggagggcactaaggcccagtatctggcagccaaagccctgaagaagcagtcgtggagg
ttccacaccaagtacatgatgtggttccagaggcacgaggagcccaagaccatcacggac
gagtttgagcagggaacctacatttactttgactacgagaagtggggccagcggaagaag
gagggcttcaccttcgagtaccggtacctggaagaccgggacctccagtga
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