Pseudoliparis swirei (Mariana hadal snailfish): 130201853
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Entry
130201853 CDS
T09868
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 2
KO
K16355
leucine-rich repeat and fibronectin type-III domain-containing protein 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130201853
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130201853
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
SALM family
130201853
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
130201853
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
I-set
Ig_3
LRR_4
ig
LRR_5
Ig_2
fn3
LRR_9
Ig_VEGFR-1-like_5th
LRRCT
Sp38
GP79
LRR_NXF1-5
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
130201853
NCBI-ProteinID:
XP_056282986
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All DBs
Position
11:8794926..8802688
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AA seq
790 aa
AA seq
DB search
MDKVVISLLLLGTAVTMVHTCPKYCVCQNLSESLGTLCPSKGLLFVPLDIDRRTVELRLG
GNFIIKVTTQDFANMSGLVDLTLSRNTISAIQPFSFLDLETLRSLHLDSNRLTQLGSDDL
RGLVNLQHLILNNNQLSRIFDTAFDDVYATLEDLDLSYNNLRSVPWEAISKMVNLHQMSL
DHNLIAFISEGTFTDLDKLARLDLTSNRLQKLPPDPIFGRSQSNAVVSTPYGPLLTLSFG
GNPLHCNCEVLWLRRLEREDDMETCASPASLKGRYFWSVREEEFICEPPLITQHTHKLLV
LEGQTASLRCKAVGDPMPTVHWVAPDDRLISNSSRATVYENGTLDITITTPKDYGTFTCI
AANAAGESTASIELSIIQLPHLSNGTNRTTQSKSGLSDITSSTKISKGEPKPLPEKVVSA
SEVTAVSAMVKWIVSKSTPKVKMYQLQYNCSEDEVLIYRMIPMTNRAFVVTNLVPGMQYD
LCVLAIWDDTATTLTATNIVGCVQFITGEDYLQCQSIHSGFLGGTMILIIGGIIVATLLI
FIFILMVRYKVTSGIQTNKLPNVSNTYSQTNGGGLNRFSGAPPQVKSTVVVMREEVVEFK
CGSLQSSLSSSSSSSHSLDSQTGRRAGDRYSMQGSECSTLPSSKFRRHRHGVNARPNLDH
LLGAFTSLELRAVARDHHGASGPSTTSNAVMTVALVPPSDKEPLLGRAESTTMLGRLLGM
PQEGKPKRSHSFDMGHVGAAAQCRGNYPRRISNIWTKRSLSVNGMLLQYDDSEDEKPPFE
SSEWVMESTV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagttgtcatcagtctcctgcttctgggaaccgcagttacgatggtccataca
tgccccaaatactgtgtgtgccagaacctctcagagtctctggggactctgtgcccctcc
aaaggcctgctctttgtcccgctggacatcgaccggcgaactgtggagctccggctgggc
ggcaacttcatcatcaaggtcacaactcaggactttgccaacatgtcaggtctggttgat
ctcaccttgtcccgaaacaccatcagcgccatccagcctttctctttcctcgacctcgag
accctgagatccctgcatctcgatagtaaccggttgactcagctgggatcagacgacctc
cgagggctagtcaacctgcagcacctgatcctcaacaacaatcagctgagtcggatcttc
gacacagcctttgacgatgtttatgcgacactggaggatctggatttgtcatataacaac
ttgcgcagtgtgccttgggaagccatcagcaagatggtcaacctccatcaaatgagtctg
gatcataacctcatcgccttcatttccgaggggacttttacagatctggataaactggcc
cgtttggacctcacgtccaaccgtcttcagaagctccctccggacccgatctttgggcgc
tcccagagcaacgcagtcgtgagcactccttatggacctctgctcactcttagctttggt
ggaaacccattgcattgcaactgcgaggtgctttggcttcgaaggctggagcgtgaggat
gatatggaaacctgcgcctctcctgctagtctaaaggggcgctacttttggtcagtccgc
gaggaggagtttatttgcgagccccctctcatcacgcaacatacacacaagttactcgtg
ctggaaggccaaacggctagcctacgctgcaaagcagtcggggatccgatgccaaccgtg
cattgggttgctcctgatgaccgtttgatcagcaactcctccagagcaacggtttatgaa
aatggcaccttagatatcacaatcaccacgccaaaggattacgggacctttacttgcata
gctgccaatgctgccggggaatctacggcctccattgagctgtcaatcattcaactcccc
catctaagtaatggtacaaatcgtaccacgcagtccaagtcggggctttcggacataact
agctctaccaagatcagcaaaggggagccgaaacctctaccagagaaggtggtgtctgca
tcagaagtgactgccgtctctgccatggtcaagtggatcgttagcaaatcaactccaaag
gtcaaaatgtatcagctgcagtacaactgttccgaggatgaagtccttatttacaggatg
attcccatgacgaacagagccttcgtagtgacaaatcttgtcccagggatgcagtatgac
ctgtgtgtcttggccatctgggatgacaccgccaccaccctcactgccaccaacatcgtc
ggctgtgtccagttcatcaccggggaggactacctgcagtgccagtccatccacagtggc
ttcctgggtggcacaatgatcctgatcatcggcggcatcattgtggccacgctgctgatt
ttcatcttcatcctcatggtgcggtacaaggtgaccagtggcatacagactaataaatta
cccaatgtgagcaacacatactctcaaaccaacggaggagggctgaacaggttcagtggt
gcgccgccgcaggtcaaatccactgtggtggtcatgcgtgaggaagtggttgagttcaag
tgtggatccctccagagcagtctgtcctcgtcctcatcctcctcccactcattagacagc
caaacaggaaggagggctggcgaccgctacagtatgcagggcagcgaatgcagcaccttg
cccagcagcaagttcaggaggcacaggcatggcgtcaacgcacggccaaacctggaccac
cttttaggggccttcacctctctggagctgcgagcggtcgcgagggaccaccacggggct
tctggaccttctaccacttccaatgctgtgatgacggtggctctggtacccccatccgat
aaagaaccgctgctcggaagagccgagtccaccaccatgctgggacggctattaggaatg
ccccaggagggtaaacccaagaggagtcactcgttcgacatgggtcatgtgggggctgct
gcgcagtgtcgcggcaactaccctcgcaggatcagcaacatctggactaagcgcagcctg
tccgttaacggcatgcttctgcagtacgatgacagcgaggacgagaagcccccttttgag
agctccgagtgggtgatggaaagcactgtttga
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