Pseudoliparis swirei (Mariana hadal snailfish): 130201872
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Entry
130201872 CDS
T09868
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130201872 (pnn)
03015 mRNA surveillance pathway
130201872 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130201872 (pnn)
03041 Spliceosome [BR:
pswi03041
]
130201872 (pnn)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130201872 (pnn)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
EJC/TREX
130201872 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
130201872
NCBI-ProteinID:
XP_056283013
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All DBs
Position
11:11446508..11454262
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AA seq
676 aa
AA seq
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MAVVVRSLQDQLDKAKEGLKNVDDNIRKLTGRDPNESRPGQIRRLGGPMAGPGGGGGGRG
LNLLRRSLSDMGSGGPPAKHRDIEGVLLRLAGDQRARRDVRHDSDAEDDDDVKKPALQSS
VVATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESHIATDKQKRRFEIEQ
KLEIQAEAEKKNVETNKRELFEERRNKQTELRLLEQKVELAQLQEEWTSHNNHLVKYIRT
KTKPPIFYAPGKMCSATQKLLDDSTKKLNVVFEERREAFAEHLSKMESRPRRQPNRDQDG
NMAATGMDHPAEGKPAGQVVKVMGNRGNEEMEEDDDDEIEEGEVKGDRKATEKDNKGVEG
KKEVLKEMEVEMVELIEEGSEENKVGEDEVKAVEDREGGKVEETSPESEEMEGGSEQVDR
SKGEEKETDSKQAPTDLQTKKTQDTQSSEPTGATQEAPNASNQSELSHTAGEPTEKPSEA
PEPQTAPTEPGQDIPTTIPGPEVLKPAAEQQAVEEKPGDKAPQKLPDSQEATGVISKQKE
EGGGGRGRKKEKQPKKGRIHGNSSSSSSSGSSSSGSSSSSSGSSHSSSSSSSSSSSSSRS
RSRNDGKRKKRPSERARDRKKGEEKGHHKKGGSGGGGGGGRDPKGSKERKKRSEEGRRSS
RSEREHQDRDRKDKRR
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtagtgcggagcttgcaagaccagctcgacaaagcgaaggaaggcctgaag
aatgtggacgataatattcgtaaattaacggggcgtgacccaaatgaatcaaggccgggt
cagatccgtcggctcggcggccccatggcgggccccggcggaggaggtggaggccgagga
ctgaaccttctcaggcgtagtctctcagacatgggaagcggcggcccccctgccaagcat
agagacatcgaaggagtcctgctgaggctggcgggggaccagcgggccaggagagacgtg
cgtcacgacagcgacgccgaagatgatgatgacgtcaaaaagccagcgttgcagtcgtct
gtagtagctacctcgaaggagagaacacgcagagacctcattcaagatcaaaccatggat
gagaggggcaaacagaggaaccggcgtatgttcggcctgctgatggggaccctgcaaaaa
ttcaagcaagagtctcacatcgccacagataagcaaaagcgtcgtttcgagatcgagcag
aagctcgaaattcaggctgaggctgagaaaaagaacgtggagaccaacaagagagagctg
tttgaggagcggagaaacaaacagactgagctgagactgctggaacagaaagtggaattg
gctcagctgcaagaggagtggaccagccacaacaaccatctggtgaaatacattcgcaca
aagaccaagcctccgatcttctacgcacctgggaaaatgtgctccgccacacagaaactc
ctcgatgactccaccaagaaactaaatgtcgtgtttgaagagaggcgtgaggcttttgcc
gaacacctcagcaagatggagtcccgcccccggcggcaaccaaaccgcgaccaggatggc
aacatggcagcaacagggatggaccacccggcggagggtaagccagcgggtcaggtagtc
aaggtgatgggtaacagggggaatgaggagatggaggaagacgacgacgacgagatagag
gagggggaggtaaagggggatagaaaggcgacagagaaggataacaagggggtggaaggg
aagaaggaggtgttgaaagagatggaggttgagatggtggagttgattgaggaggggagt
gaggagaataaggtaggagaggatgaggttaaagctgtagaggacagggaagggggcaag
gtagaggagaccagtccagagtcagaagagatggagggtgggtcagagcaggtggacagg
agtaagggtgaggagaaggagacagacagtaaacaggcgcccacagacctccaaaccaag
aagacccaggacacccagtcctctgaaccaaccggcgccacccaagaagccccgaatgcc
agtaaccaatctgagctcagccacacagcaggggagcccacagagaagccttctgaggcc
ccagaaccccaaacggcccccacagagcctgggcaggatatccccaccaccatccctggc
cccgaggtcctaaagcctgcagcagagcagcaggccgtggaagagaagccgggcgacaaa
gcgccccaaaaactgcccgattcccaggaggccaccggcgtcatctccaagcagaaggag
gaaggcggcggtgggagagggcgaaagaaggaaaagcagccaaagaagggccgcattcat
ggcaacagctcctcctcttcctcctccggctcctcctccagcggaagctcctcctcgtcc
tccggatccagccactcttcttcctcatcctcatcgtcctcgtcgtcaagcagccgaagt
cgcagccgcaacgacggcaagcgcaagaagaggccgtctgagagggccagggaccggaag
aaaggagaagagaaaggtcaccacaagaaaggagggagcggaggaggaggaggaggaggg
agggacccaaaagggtccaaggagaggaagaagaggagcgaggaaggaaggaggtcatcc
cgcagcgaaagggagcatcaagatagagacaggaaggacaagagacgctga
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