Pseudoliparis swirei (Mariana hadal snailfish): 130201879
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Entry
130201879 CDS
T09868
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130201879 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130201879 (arid1b)
03021 Transcription machinery [BR:
pswi03021
]
130201879 (arid1b)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130201879 (arid1b)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
ARID
130201879 (arid1b)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130201879 (arid1b)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130201879 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
130201879
NCBI-ProteinID:
XP_056283032
LinkDB
All DBs
Position
11:13399196..13559658
Genome browser
AA seq
1981 aa
AA seq
DB search
MMMGSNSSASHGKSPLAAASGGFQRFPGPTQQQHPSGATPTLNQLLTSPSPMMRGYGGAY
HDYSGSAAQQQAGMSLGKDAGPQYGSSSAHGWGGQQRNHPHAMSPGNGEQGLGRTQVSSM
DFMAMKRSQLYSMANNPYSSPQQPGGGGPYPPSQPYTSPPPHRYPMSMQGRGQMGMQGMQ
YPQQQQVAPYGQQGMGGYSQQQQQAGQQGTPPYFSPPQQTPPGQTQSPYLQPRPPPQQEA
QQETYVTRGPAPGNSGKANNEDGISQDRPSSLPDLSGSIDDLPTGTEAGLGSAVSVAGSS
SSSSSSSSQGEQGGAGNQGQSPFSPHASPHLPSQRSGPSPSPVGSPAGSTQSQQSRSGSG
PISPASGPSANTTAPGSAMAPLSSGNGPEGAHPPITRSPMAQEKGFMSNMQRNQGSSQFA
SPQSGSSMSPHPSPGGPLYSVVGPYSQSGPPGPYGPQGSQYGHQGNYPRPSNYGGPASTS
YSGPGPGMTNSLGMNASSPMHGQGPGQPIPGGRSSHGPGSQNRVYPPMAPSSPSMPQPAG
HGMGPPSLGNSNRKAQEAAAAAMPGSANSTHNRQGSHQGPGISQASTTAATVPNSQPTGN
NSSAMGNAQGPAYNMPPSGAMGVMSPDGKSKTDIKDDSGPANEPHKPKLQDGYSSNNNNN
NSSSSSSSQQCVSQPATPGSALPVPSPLSPSPASLSSYHGDDSDSISSPPWPLKTPSSPK
ANPNSSSLSGERITRLLELGVEPERRGWVERYLTFMEERGTPVTQLPTVGKKPLDLWKLY
VAVREIGGLAMVNKNKKWRELSTTLNVGTSSTSASSLKKQYIQYLFACECKMERGEDAPA
DSSSSGSSSVAGGDGRKQVKIQPPSPAHSGGSLQGPQTPLSSGGSSTAEAAGDLKPPTPA
TTPLGQVTPLPPNRSNVSVQDPFSEVSDPAFQKRAASQPPSAPYQQGLSMPDMMMRMQYD
SKDPFAGMRKMAGADPYIPGQMPSGGMQDMYGRPPSALSMSQRPQYPYGPGYDRRPDHVM
GMEGNMGPPGSQNNMGPSNSEGSMYSPSRYPSQQRHDGYSQQYPNMPYGMHPSGMYPQQQ
QGYKRPMDGMYGPPPKRHEGDMYAMQYANQQPDMYNHYGGGYSGPEHRPIQGQFPYPYPR
DRMGPSGQSQHSMMGGGPTPNHAADGPNMWPSRTELGYPYPNRQGPPSQVPPYGSMGRDD
MDGRPGPEQWHRQSPYMSSSGGMPPLSSRQPSPYSNSPSMANHLSRALSPGAFQRSMDSR
MSPKALFMSPMKMPKPGMTMMGSQGGGSFGHFPPNLRRDFNYPPGSVEATMPILKPRRKL
TSKDTGTPEAWRVMMSLKCGLLAESTWALDTINILLYDDSTVGSFTLSQLPGFLELIVEY
FRRYLIEIFGILEEFEVGTVAQKSLLDPAGKQKEEVIPDQETDSSGHPEPESAPAEEMQV
EPAGGLVEEAQPATAAEPQSAEASSEKEKSQEMSIKKEDTNDEDREKDGTEEESEKGAEN
KKESVEQPVAELKPKLQQASKYDKLPIQIVHKEDMLEDMTEHLGYVTEFTSGLLHWQAGG
GNSTAHIQTQFEPRGAPPPRAEEGKAGKENAEENAVVEDGRKHPLRHITATIDDVLCARV
GALSYAYPARSLPSYPFRAHPDGEQDHITLLEDEPRCLDEAALSTSSAWQDELAKRCLCI
SNIVRSLSFIPGNDSDMSRHPALVLLLGRLLLLHHQHPERNRSPPGYQRDEQKERGLSSS
TEEWRWECLSQLRENAMVSLANISGQLDLSTYPDTICLPVLDGLLHWMVCPSAEAQDPFP
SAAPHSQLTPQRLALEALCKLSIQGGNVDLLLATPPFSRQEKLFTILVRYVGQRKAQVYR
EMAVAVLSHLAQGDPTAARAIAVQKGSVGHLVGFLDDGVSMAQYQQNPHSLLHMGHPPMD
PPSINMMCRAAKGLLAMAQVEENKSEFVLYESRLLDISISSVLNAGVVAIICQVLFHLGK
L
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgggcagcaactcctcagcgagccacggcaagtctcccctggccgccgcttcg
ggtggcttccagaggttcccaggaccaacgcagcagcagcacccctcgggggccacgccg
acactcaaccaactgctgacgtccccgagccccatgatgcggggctacggcggggcatat
catgactacagcggctccgcggcgcaacagcaggccggcatgagcctggggaaagacgcg
gggccccagtatggaagcagctcggcccacggctggggagggcagcaaagaaaccacccg
catgccatgagtccaggcaacggagagcaaggcctcggcaggacacaggtgtcctccatg
gacttcatggctatgaagcgctcgcagctctacagcatggccaacaacccgtactcctct
ccacagcagccgggaggaggcgggccttaccctccgagccagccatacacatcacctcct
ccgcacagatatccaatgagcatgcaagggaggggccaaatgggcatgcaagggatgcag
tatcctcaacagcagcaggtggcgccatatggccagcaggggatggggggctacagccag
cagcagcagcaggcagggcagcagggaacccctccgtacttcagcccccctcagcagacc
cctccaggccaaacccagagcccttacctgcagcctcgacccccaccacaacaggaggcc
cagcaggagacgtacgtaaccaggggtccggccccagggaattctgggaaggccaacaat
gaggacggcatctcccaagaccgcccgtccagtctgccggatctgtccggttcgattgat
gacctccccaccgggacggaggccggtctgggctcagccgtcagcgtcgccggctcctcc
tccagcagcagcagcagcagcagccagggggagcagggaggggccggcaaccagggacag
tcccccttctcccctcacgcctccccccacctccccagccagaggagcgggccctctccc
tcccctgtgggctcacccgcaggctccactcagtcccagcagtcgcgatccggctctgga
cccatctctcctgccagtggaccctcggccaacaccaccgcaccaggttctgcgatggcc
ccactgagctctgggaacggaccagaaggagcccacccgccaatcacccgctcacctatg
gctcaggagaaagggttcatgtccaacatgcagagaaaccagggtagctctcaatttgcc
tctcctcaatccggatcttcgatgtccccccacccgtcacctgggggcccattgtattct
gtggtgggaccctactcccagagtggccctccaggcccgtacggacctcaaggatcccag
tatggacaccaaggtaactacccccggccctccaactatggtggtcctgccagcaccagc
tacagtggccctggccctggcatgaccaacagtctggggatgaatgcaagcagccccatg
cacggccaggggcccggccagcccatacctgggggtcgcagcagccacggcccgggcagc
cagaacagggtgtacccgcccatggctcccagctcccccagcatgccccagccagctggg
cacgggatgggccctccttctttgggtaattctaaccgcaaggcccaggaggcagcagca
gctgccatgccgggatctgccaactccacacacaacaggcagggcagccatcaaggccct
ggcatcagccaggcgagcaccacggctgccactgtccccaacagccagccaacggggaac
aacagctcagccatgggcaacgcacaaggtccagcctacaatatgccgccttcaggagcc
atgggggtgatgagcccagatgggaaatcaaagacggacatcaaagacgacagcggcccg
gccaacgagcctcacaagccaaagctccaagacggctacagcagcaacaacaacaacaac
aacagcagcagcagcagcagctcccagcagtgcgtgtcccagccggccacgccaggcagc
gccctgcccgtgccctcccccctctcgcccagcccagccagcctgtcctcgtaccatgga
gacgacagcgacagcatcagcagccccccctggcccctcaagaccccctccagtcctaaa
gccaacccaaactcctcctccctcagtggggagcgaatcacacgcctacttgagctgggt
gtggagcctgagaggcggggctgggtggagcgatacctgaccttcatggaggaaaggggc
acgcctgttacccagcttcccactgtgggcaagaagccgctggacctctggaagctctac
gtagctgtgcgggagataggaggcctcgccatggtaaacaagaataagaagtggcgcgag
ctgtccaccaccctgaacgtgggtacatccagcacctccgccagctcgctcaagaagcag
tacatccagtatctgtttgcctgcgagtgtaagatggagaggggagaagatgcgcctgca
gacagcagcagcagcggcagcagcagcgtggccggaggggacggcaggaagcaggtcaag
atccagccgccctcacctgctcattcaggcggctccctccaaggccctcagacgcccctg
tcctctggcggcagctcgacagcagaggcagcgggtgatctgaaaccccccacacctgcc
accacgcccttgggacaggtcacacccctgccccccaacaggagcaatgtgagcgtacag
gacccattctcggaggtgagtgacccggccttccagaagcgtgcggcctcccagcccccc
tcagctccttaccagcagggcctcagcatgcctgacatgatgatgaggatgcagtacgac
tccaaggaccccttcgccgggatgaggaagatggcaggagctgatccgtacataccgggc
cagatgcccagtggtggcatgcaggacatgtatggtcgaccgccgtcagccttgagcatg
agccagcggccgcagtatccatatggaccgggctatgacaggagaccggaccatgtcatg
gggatggagggcaacatgggtccccctgggagtcagaacaacatgggaccctcgaacagt
gagggcagcatgtactctcccagtagatacccttcacagcagagacacgacggctacagt
cagcagtatcccaacatgccatatgggatgcatccatctgggatgtaccctcagcaacag
cagggctacaaacggcccatggacggcatgtacggccccccacccaagagacacgaaggc
gacatgtacgccatgcagtacgccaaccagcagccggacatgtacaaccactacgggggc
gggtactcgggccccgagcacagacccatccagggacagttcccctacccctacccccgc
gaccgcatgggcccctcaggtcagagccagcacagtatgatgggtggggggcccactcct
aatcatgccgccgatggccccaacatgtggccgtccaggactgagcttggctacccctac
cccaaccgacaggggccgccatcacaggtgcctccttacggctcaatgggcagagacgac
atggacggacgtccggggccggagcagtggcaccgtcagtctccctacatgtcttcatcg
ggggggatgcctcccctgtcctcacgccagccatctccttactccaactctccatccatg
gccaaccacctgtccagagccctcagcccaggagccttccagcgctccatggactccagg
atgtcacccaaagccctgttcatgtcgcccatgaagatgccgaagcctgggatgaccatg
atgggctcacagggaggcggatcctttggtcactttcctcccaacctgaggcgggacttc
aactacccaccaggatcagtggaggccaccatgccgattcttaagcccaggcgcaagctc
acctccaaggacactggaacgcctgaggcctggcgcgtgatgatgtctctgaagtgcggc
ctgctggcagaaagcacctgggccctagacaccatcaatatcctgctgtacgatgacagc
actgtgggctccttcaccctctcgcagttgccaggattcctcgagctgattgtggagtac
ttccgccggtacctgattgagatctttggcatcctggaagagtttgaggtggggacagtg
gcccagaaaagccttttagaccccgccggtaaacagaaagaagaagtcatccccgaccag
gaaacggactctagcggccatcctgaacctgagtccgctccggcagaggagatgcaggtg
gagccagcaggaggcctcgtggaggaggctcagccagccactgctgcagagccacagtca
gctgaggccagcagtgagaaggagaagtctcaagagatgagtataaagaaggaggacaca
aatgacgaggaccgagagaaagacggaacagaagaagagagtgaaaaaggagcagagaac
aaaaaggagagtgttgagcagccggtcgcagagctaaagcccaaactccagcaagccagt
aaatacgataagctccccatccagattgtccacaaagaggacatgttggaagacatgaca
gagcacttgggttacgtcactgagttcacgagcgggttgctccactggcaggcgggcgga
ggcaactccaccgcacacattcaaacacaatttgaaccccgcggcgcaccgcctcccagg
gcggaggagggcaaggcgggaaaggaaaacgccgaggagaacgcggtggtggaggatggg
aggaaacacccgctgagacatatcaccgccacgatagacgatgtcctgtgtgctcgggtc
ggcgccctttcttacgcctaccctgcgcgctccttgccatcctaccccttcagggcgcat
cccgacggggagcaggaccacatcaccttgctggaggacgagcctcgctgcctggacgag
gcggcgctctccacctcctccgcctggcaggacgagctggccaagcgctgcctgtgcatc
tccaacatcgtccgcagcctgtcctttatccccggaaacgactcggacatgtcccgccac
cctgccctggttctccttctgggccggctgctcctgctgcaccaccagcacccggagagg
aaccggtcgccccccggctaccagagggacgagcagaaggagcgggggctgtcgagcagc
acagaggagtggcggtgggagtgtctgagtcagctccgggagaacgccatggtcagtctg
gccaacatctcgggtcagctggatctctccacctacccagacactatctgcctccccgtc
ttggatggccttctccactggatggtgtgcccttcagctgaagcccaggacccgttccca
tcagcagcaccccactcccagctcactccccagaggctggcgctggaggcgctctgcaag
ctgagcatccagggcggcaacgtggacctcctgctcgctacgccgcctttcagccgacag
gagaagcttttcaccatcttggtccgctacgtgggccagaggaaggcccaggtgtacaga
gagatggccgtggccgtgctctcccacctggcacaaggagaccccacggcagcgcgggcc
atcgccgtgcagaagggcagcgtggggcatttggtcggcttcttggacgatggtgtgagc
atggcgcagtaccagcagaaccctcacagcttgctgcacatggggcacccccccatggac
ccacccagcataaacatgatgtgcagagccgctaaaggcctgttggcgatggcccaagtg
gaggagaacaagtcagagtttgtgttgtacgaaagccgattattagacatctccatttcc
tctgtgctcaacgcgggggtggtggctattatttgccaagttctctttcacctggggaaa
ttatga
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