Pseudoliparis swirei (Mariana hadal snailfish): 130201953
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Entry
130201953 CDS
T09868
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04137
Mitophagy - animal
pswi04140
Autophagy - animal
pswi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130201953 (hif1aa)
04137 Mitophagy - animal
130201953 (hif1aa)
04148 Efferocytosis
130201953 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130201953 (hif1aa)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130201953 (hif1aa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
130201953
NCBI-ProteinID:
XP_056283153
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Position
11:complement(2124139..2136139)
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AA seq
758 aa
AA seq
DB search
MDTGTVPEKKRVSSDRRKEKSRDAARSRRGKESEVFYELAQELPLPHSVSAGMDKASIMR
LIISYLRMRKVLGTDEPMKDEETELESQLNGSYLKALDGFLLVLSEDGDMIYLSENVNKC
LGLAQFDLTGLSVFDFIHPCDQEELREMLLHKTGSKKAKEPNTERSFFLRMKCTLTSRGR
TVNVKSATWKVLHCSGHVRVYESHAEEPPNGHEEPPVPYLVLICDPIQHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLTKTHHDLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLILSLEQIEDV
KSVEEEEEQQQQQQQQEEEEEDVVESSQPDVAQALLQDEKKGPELDVIKRFTRALEAKPL
ASLYDQLKAEPEALTLLAPDAGDAIISLDFSCSDSEIQLLKEVPLYNDVMLPSTSDELAL
PLSPLPLSEPLCVTTTSSEDVKAESYAPARLTSMTGHNSSEADSPLDFCYPMDSEMSSDF
KLDLVEKLFAIDTEPKTPFTTQAMEDLDLEMLAPYIPMDDDFQLRSLTPEESLPCGPVQY
LPSSPVHVPQDIQSYPSSPFSAAGSRTTSPAPLAAAISAQRTPQLDKDVSLWTLAAQNSQ
RKRKLGDIREIIGQKTLPQEPAEQGKKLKASGSTRTIFLLPSDLASRLLGSTSEGTGSLF
TLPQLTRYDCEVNAPLQGRQSLLQGEELLCALDHANSI
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaactgttccagaaaagaaaagggtgagctcggatcggaggaaggagaag
tcgagggatgcggcgcgatcccggcgtgggaaggagtcggaggtgttctacgagctggcg
caggagctgcccctgccccacagcgtcagcgccggcatggacaaggcctccatcatgagg
ctcatcatcagctacctgcgcatgaggaaagtgctcggcaccgatgagccaatgaaagac
gaggaaacggagcttgaatcgcagctaaatggctcctacctcaaagctttggacggcttt
cttctggtcctgtcggaagatggagatatgatctatctctccgagaatgtcaacaagtgc
ctcgggctggcacagtttgacttgactggactcagtgtgtttgacttcatacatccttgc
gaccaggaggagctgagggagatgctcctccacaaaacaggctccaaaaaggccaaggag
ccaaacacagagcgcagcttcttcctccgaatgaaatgcactctcaccagcaggggccgc
accgtcaatgtcaaatcagcgacatggaaggtgctccactgctcgggtcatgtccgtgtg
tacgagtcccacgccgaggagcctcccaacgggcacgaggagccgcctgtcccctacctg
gttctgatctgcgaccccatccaacacccctccaacattgaggtccctcttgacaccaag
acttttctcagccgccatacgatggacatgaagttcacgtattgtgatgaaaggatcaca
gagctcatgggttatgatccagaggacctgttgaatcgctctgtgtacgagtactatcac
gctctggactcggaccatctaaccaagactcaccacgacttgtttgcaaaaggccaagtc
agcacaggccagtaccggatgttggccaagagaggaggctttgtgtgggtggaaacacaa
gccactgtcatctacaacaacaagaactctcagccacagtgtgttgtctgtgtcaacttc
gtgctcagtggcatccaggaggagaaactgatattgtccctggagcaaatcgaggatgtg
aagtcagtggaagaagaggaggagcagcagcagcagcagcagcagcaggaggaagaagaa
gaggatgtggtggagagcagccagcccgacgttgctcaggccctgctgcaggacgagaag
aagggcccagagctggatgtgatcaaacggttcactcgggcactcgaggccaaacctctg
gctagcctgtatgaccagctgaaggcggagccagaggccctcacactgctggctcccgat
gctggagacgcaatcatctccctggacttcagctgctctgattcagagatccagctgctg
aaggaggtccctctttacaacgatgtaatgcttccctccaccagcgacgagctggctctg
cctctttcccccctgccgctcagcgagcctctctgtgtcaccaccaccagctccgaggac
gtcaaagctgagagctatgctcccgcccggctcacctctatgaccggccacaactcctca
gaggccgacagtcctctggacttttgctatcccatggactcagagatgagctcagatttc
aaactagacctggtggagaagctgtttgccatagacaccgagcccaagacccccttcacc
acacaggcaatggaagacttggatctggagatgttggctccctacattcccatggacgat
gacttccagctgcgcagtctgaccccagaagagtctctaccttgtggaccggtccagtac
ctcccgagttctccagtccatgtgccacaggacattcaaagttatcccagctccccattt
agtgcagcaggtagccgcacaacttccccagcaccacttgctgccgccatcagtgctcag
aggaccccacagctggacaaagacgtctcgctctggaccctggcagctcagaattcacag
cgcaaaagaaagctgggtgacataagagagattattggacagaaaacgttgccccaggaa
ccagcggagcagggcaaaaagctgaaggcctcggggtcaaccaggaccatattcctgctg
ccttcagacttggcgagtcgtctgctgggaagcacatcagagggcaccggttccctcttc
accctgccacagctcacccgctacgactgcgaggtcaacgcccccttgcagggccgtcag
tccctgctgcagggagaggagctgctgtgcgcgctggaccacgccaattcaatctag
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