Pseudoliparis swirei (Mariana hadal snailfish): 130201954
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Entry
130201954 CDS
T09868
Symbol
rtn1a
Name
(RefSeq) reticulon-1a isoform X1
KO
K20721
reticulon-1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130201954 (rtn1a)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130201954 (rtn1a)
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
130201954 (rtn1a)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130201954 (rtn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Reticulon
DUF4736
RHD_RETREG1-3
Motif
Other DBs
NCBI-GeneID:
130201954
NCBI-ProteinID:
XP_056283156
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All DBs
Position
11:2337345..2356306
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AA seq
712 aa
AA seq
DB search
MSAQPGEELGSEGRWFGDDYERNGPFGNTPARLSDLHEDRKPRGDEPSGERDQQSHSLQD
DGKKPPVAMETASTDDPMSGLFRTPMNDDRDVYTSLMSNQSFTSGQEASYLSDDLKPSKP
SSGSSALDPFSSDPYSFSSKMTSDLADDMPRPLFGSDKTESYNYMDISHGDERQDQHSLV
DTGSTGHDSLGSYMERNHRGDDEEEESSALGSHSFPYVEEPSDEELSDYRSYRNLGGTPQ
TASPVKITLTESHPQMVQTALQQLAPPISVSERENVLSVGLQGVPTVTLSEPEDDSPAST
PNASPTQKEFPPHDMFKASKRSPSTKAGRREHDGSSAESGDSEIELVSEEPPKATSNPFV
QPPKSKGTSSPPNNPFDNPPAAKGGFGPAGNHALTTAYSILREEREAELDSDLFNESASE
ESPKREQGFSDPKQGVCPPSPLVPSAVLPRSTAEAAPAEPPITETVKTPVKTEEDRSSKP
KPPTAAVPPEVRCAHQEEMHKPTNEGRGDLGKPAAFLQGFDKQKAIDLLYWRNVKQSGAV
FSSVLLLLFSLTQFSVVSVGAYLALAALSASISFRIYKSVLQAVQKTDEGHPFKAYLEIE
IALSQDQISKYADKILLYTNTCMKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTL
LILAVVSMFGMPVVYEKHQAQIDQYVGLIRTHVNSVVGKIQAKIPGAKRKEE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctcagcccggcgaggagctcggttcggaggggaggtggttcggggatgactat
gagaggaacggcccgtttgggaacacgccggcccggttgagcgacctacatgaggaccgt
aaaccgagaggcgacgagccgtcgggcgaacgggatcaacagtctcattctctccaggac
gacgggaaaaagcctcccgttgctatggaaactgcatctacagatgaccccatgtccggc
ctgtttaggacgccgatgaacgacgatagggatgtctacacttccctgatgtcaaatcag
agcttcacatcaggtcaggaagcctcctacctgtcggatgacctgaaaccctctaagccc
tcttctggctcctctgccctggatcccttctccagcgacccctatagcttcagctccaag
atgacatccgacctggctgatgacatgccaagacctctgtttggctcagataagaccgaa
tcctacaactacatggacattagccacggggatgagcgtcaagaccagcacagcctggtg
gacacaggctcaactggtcatgactcattgggcagctacatggaaagaaatcacagagga
gatgacgaggaagaggaaagctcagcactgggctcccactctttcccctacgtggaagag
ccatccgatgaagagctgtcagattaccgctcctaccgtaacctaggtggaaccccgcag
acggccagcccggtgaagatcactttgaccgagtcccatcctcaaatggtccagactgcg
ctgcagcaactcgcacctccaatcagtgtgtctgagcgtgagaacgtcctcagtgtgggc
ctgcagggggttcccactgtgacgctatcagagccagaagatgacagccctgcctccact
cccaatgcttcaccaacacaaaaagaattccctccccatgacatgttcaaggcttccaaa
aggagtccgagcaccaaggccggccgcagggagcacgatggcagcagcgccgagtctggc
gactcagagattgagctggtgtctgaggagcctccaaaggccacgagcaacccatttgtc
cagccgcctaaaagcaagggcacttccagcccgcctaacaacccctttgacaatccccca
gcagccaagggtggtttcggcccagcaggcaaccacgctctgaccacagcctacagcatt
ctgagggaggagagagaggcagagctcgacagcgatctcttcaatgagtctgcgtctgaa
gagagcccaaagagagagcagggcttcagtgaccccaaacagggagtatgccctccctcc
cccctggttcccagcgccgtcctcccccgaagtacggctgaggcggcgccggccgagccc
ccgatcacagaaacggtcaagaccccggtgaaaacagaggaggaccgcagcagcaagccc
aagccaccgactgctgccgtgcccccagaggttcgttgcgcccaccaggaggagatgcac
aagcccaccaatgagggcagaggagacctcggaaagcccgctgccttcctgcagggcttt
gataaacaaaaagcaattgacctgctctactggaggaatgtgaagcagtccggggctgtg
ttcagcagcgtgctcctgctcctcttctcgctgacccagttcagcgtggtcagcgtcgga
gcctacttggccctcgcggccctctctgccagcatcagcttcaggatctacaagtctgtg
ctgcaggctgtgcagaagaccgatgagggacacccgttcaaagcctacttggagatcgaa
atcgctctatcccaggaccagattagtaaatatgccgacaaaatcctcctgtacaccaac
acctgcatgaaggagctccgcaggctgttcctcgtacaagacttggtggactccttaaag
tttgctgttttgatgtggctgctgacctacgtgggcgctctcttcaacggcctgacactg
ctcatcctagcggtggtctccatgttcggcatgccggtggtctacgagaaacatcaggcg
cagattgaccagtatgtgggactaatacggacccacgtcaactctgtggtggggaagatc
caagcgaagatccccggggccaagaggaaggaggagtag
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integrated database retrieval system
