Pseudoliparis swirei (Mariana hadal snailfish): 130202023
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Entry
130202023 CDS
T09868
Symbol
lrfn5a
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130202023 (lrfn5a)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
130202023 (lrfn5a)
BRITE hierarchy
Motif
Pfam:
LRR_8
LRR_4
Ig_3
I-set
LRR_5
LRR_1
ig
Ig_2
LRR_9
fn3
C2-set_2
Rop
Ig_5
Motif
Other DBs
NCBI-GeneID:
130202023
NCBI-ProteinID:
XP_056283276
LinkDB
All DBs
Position
11:complement(10749233..10810037)
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AA seq
843 aa
AA seq
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MERLLLCVMVGVAMAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDKHTVELRLA
DNFVTSVKRKDFANMTRLVDLTLSRNTISFITPQAFTDLENLRALHLNSNRLTRIDNDTF
SGMTKLHHLILNNNQLVLIHQGAFNDLLALEELDLSYNNLETIPWETIQRMISLHTLSLD
HNMLDFIPEGTFSLLQKLNRLDVTSNKLQKLPPDPLFQRAQVLATSGIMTSTSFALSFGG
NPLHCNCELLWLRRLYREDDLETCASPQQLSGRYFWSVPEEEFLCEPPLITRYSHEMKVL
EGQRVTLRCKARGDPEPAIHWISPEGKLVSNSSRTLVYTNGTLDILISTVKDTGSFNCIS
SNPAGEAHQTIDLVIIKLPHISNNTNNIQEPDPGSSDISTSTRGGANGSNVTGDVKGGVE
KRVVSAEATSSTALIKFHFQRTIPGIRMFQIQYNGSQDDSLVYRMIPPSSKNFLVNNLAA
GTPYDLCVLAIYDDVITSLTATRVVGCVQFTTESEYMRCHFMQSQFLGGTMIIIIGGIIV
ASVLVFIIILMIRYKVCNPGDGGKGVLLSMTNVHSQTNGQQSQGCTVTPSSSKHGSIGLD
DFSGGAKKTSGGEMCKDTITQSPDSSLPDCSTTTSVLSQPWGARSPTAGEERAQAGVSSP
TGAAGSLPKSKRKPAPGKPGAACSNASALTENLPSSSLALLHPTPPENLNTNLNNSTSLN
QNPYSFPPSPFSGPLATLSPVPTTRFRETPILRRAPRGSASAKYQTLPVEEAGRSRARRR
YSLSEGGLKTHSPHQGAGGAPRVGRLTRNKRSQSMSGILLPKDGDGDSEKGRCDSDWILE
STV
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctgttgctgtgtgtgatggtgggagttgccatggcagtgcgggcgcagatc
tgcccgaagcgctgcgtctgtcagatcctgtcgcccaacctggcaaccctctgcgccaag
aaaggtctgctgttcgtaccaccgaacatcgacaagcacaccgtggagctgcggctggct
gacaactttgtcacaagtgtgaagaggaaagattttgctaacatgacacggctggtggac
ctaacgttatccagaaacaccatctccttcatcacgcctcaagcctttaccgatttagaa
aacctcagagcgctacacctcaacagcaaccggctgacgcggatcgacaatgatacattc
agcgggatgacgaagctacaccacctgattctgaacaacaaccagctggtgctgatccac
cagggagcattcaatgacctgctggcactggaagaattggacctcagttacaacaacctg
gagactattccttgggagaccatccagagaatgattagcctccatacgctgagtttagac
cacaacatgttggacttcattcccgagggaactttttccctgctacagaaactcaaccgg
ctggacgtcacctcgaataaactccagaagctgccaccggaccccctttttcaacgagca
caggtcctggctacatcagggatcatgacctccacttcatttgcgttgtcgttcggtggg
aaccctctccactgcaactgtgagttactgtggctgcggaggctgtacagggaggacgac
ctggagacgtgcgcctcgccccaacagctctccggccgctacttctggtccgtcccggag
gaggagttcctctgcgaacctccactcatcaccagatactctcatgagatgaaggtgctt
gaagggcagagagttacactcaggtgtaaggcaagaggtgacccagagccggccatccac
tggatctctcctgagggcaagctggtgtctaactcctccaggacgttggtctacaccaac
ggtactctggacatcctcatcagtacggtgaaagacaccggctccttcaactgcatctcc
tccaacccggccggcgaagcccaccaaacaatagacctggtcatcataaaactcccccat
atctccaacaacaccaacaacatccaggagcccgacccgggttcctcggacatttccacg
tccacccgaggcggcgccaacgggagcaacgtgacgggcgacgtgaaaggcggcgtggaa
aagcgggtggtgtctgcggaggccacgtcctcaacggcgctgataaagttccacttccag
aggactattcccggcatccggatgttccagatacagtacaacgggagccaagacgactcg
ctggtctacagaatgatcccgccgtcgagcaagaactttctggtgaacaacttggcggcg
gggacgccgtacgacctgtgcgttctggccatctacgacgacgtcatcacctctctgacg
gcgacgcgcgtcgtcggctgcgtgcagttcaccaccgagtccgagtacatgcggtgtcac
ttcatgcagtcccagttcctcggcggcaccatgatcatcatcatcggaggcataatcgtg
gcttcggtgctcgtcttcatcatcattctgatgatacggtacaaggtgtgtaaccctggc
gacggcggtaaaggcgttttgctgtcgatgaccaacgtccactcacagaccaacgggcag
cagtcccagggatgcaccgtgacgcccagctcctccaaacacggctcgatcggcttagac
gacttctcggggggcgcgaagaagacgagcggcggggaaatgtgtaaggacaccataacc
cagtcgcccgactcgtccctgcccgactgctccaccaccacgtcggtcctcagccagccc
tggggagccagaagcccgaccgccggcgaggagagagcgcaggccggcgtctcgtcgccc
accggcgctgccggctctctgcccaagtccaagcggaagcccgctccgggtaagccgggc
gcggcttgctccaacgcctcggcccttactgaaaacctcccgtcctcctccttggctctc
ctccaccccaccccgccggagaacctcaacaccaacctcaacaactccacctctctcaac
cagaacccgtactccttccccccgtcccctttctccggccctctcgccaccctcagcccc
gtgccgaccacccggtttcgagagacgccgatcctgcgcagggctccccgcggctccgcc
tccgccaagtaccagacactccccgtggaggaggccgggaggagcagggcgaggaggagg
tactcgctcagcgaaggaggcttaaagactcactcgccccatcagggagcaggaggagcg
cccagagtcgggcgcttaacgcgcaacaagaggagccaatcgatgagcgggatcctactc
ccgaaagacggggacggagactcagaaaaagggcggtgcgattcggactggatcttagag
agcacggtttga
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