Pseudoliparis swirei (Mariana hadal snailfish): 130202043
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Entry
130202043 CDS
T09868
Name
(RefSeq) fibronectin-like isoform X1
KO
K05717
fibronectin 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04810
Regulation of actin cytoskeleton
pswi04820
Cytoskeleton in muscle cells
pswi05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130202043
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130202043
09142 Cell motility
04820 Cytoskeleton in muscle cells
130202043
04810 Regulation of actin cytoskeleton
130202043
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
130202043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130202043
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130202043
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130202043
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130202043
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
130202043
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
130202043
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130202043
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
130202043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
fn2
Fn3_Dep-1_2nd
Fn3_Dep-1_4th
FN3_Tor_3rd
Motif
Other DBs
NCBI-GeneID:
130202043
NCBI-ProteinID:
XP_056283311
LinkDB
All DBs
Position
2:complement(16320818..16351211)
Genome browser
AA seq
2514 aa
AA seq
DB search
MSGSTIARVLVALCIGSAVNCMPKGTHKSRRQAQQHQRSSVSQDGCLENGQFYGINDQWD
RPYLGSILVCTCYGVAGIKCKSKPEAEEKCYDKINQQSYTVGATYERPKEGMIWDCTCIG
SGRGKISCTIGNRCHEGGASYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPVAERCY
DNSAGTSFVVGETWEKPYQGWMVVDCTCLGEGSGRITCTSRNRCNDQETLTSYRIGDTWT
KTDTQGHTLQCLCTGNGRGEWKCERHASLRTTGLGTGSRVVTNIHPAVYHPATVPELTQN
GPCRTDAGLSYFIGQRWMRNQGTKQLICTCLGNGVSCEQWDGPAPVYGGNSDGQPCVFPF
LYKGKTYHSCISDGRSDGQLWCSISSDFETDQKYSFCTERNVIMGTRGGNSNGALCQFPY
LYNGRNYTDCTADGRRDGMKWCGTTTDYDGEQRFGFCPMADHEEVCTTSEGVMYRTGEQW
DKRHDVLGHMMRCTCVGNGRGEWSCVAYSQLKDQCIVDGLNYEVNQTFTKQHEEGYTMNC
TCFGQGRGRWKCDAIDQCQEPETRAFYKIGESWDKVIQGIMYKCYCYGNGVGELSCEPQQ
SYPGGNRPVQVIITESGKQTNSHPIQWNAPQSAHITQYILKWKVKNTRSSWREVMIPGHL
NSYTISGLKPGITYEGQLISVLRFGRQELTRFDFTTNYGSLATSQGETTQPPPVVDISES
VTEITSSSFVISWVSASDTVSGFRVEYELSENGQGTGHALVVDVPHTATSVNINELLPGR
KYTVNVFEVTDGGDDNLILTTSQTTAPDAPLEHDVEEVGETSIVISWEKPLAPITGYRVV
YTPSLEGESTELTLPDTATSVTLSDLLPGKLYNISIYAVEDSLESEPIFVQVNTAGVPQP
EEVSSPTDLQFFEVSDNKIVLTWTGPASAVSGFRVTAFPVDESGSPQREMTLPVSQNSYI
EVSHLLPGTLYRFNVYTIHNGEESLPLIGEQTTKPDAPTDIHFANVTEDSAVILWFAPRA
KITGYRLFLTIEGSNPKQLRLPARLSQYTLLNLKPDSDYTATLHAEQENTLSEGESAVFT
TNLPMGNAPHFSTDVTDTSIIISWTPVPNVGYKLTVRPSQGGEAPRDVTSDSGSIYVSGL
TPGVEYTYSVQPVINGHEQGTPITRRVVTPLSPPTDLNLQSNPSTGELIVQWNGASTPDI
TGYKVTCTPTNGQQGNSLEEFVEAGQNSCTLENLSPGVEYNISVVTVKDDMESTPISTTI
TPEVPKLTDLTFMDVSDTTISLSWSPLNTTAITGYRITVVAAGDSVPIFEDMVLSTTGQY
TVYGLEPGIDYDISVITVTENGESEPTTVTQKTSVPAPTDLGFAQVGPDTMQVTWVNPIV
PNIADINSFLIRYHPIDDEDDITETSAEGGSNNVVLRNLLPNTEYLVSVVCVYEQRESSP
LVGTQTTALDSPVGLRFSEILTNSFTLHWLAPQSKITGYRIRYQMVSGGRTKDERLPPSR
NHFTLTGLTADTEYSVNIYTVRGSKESLPLSGKQKTISDAPTDLEVLESSPTSITVRWDA
PPVTVRYYRITHGESGGHSNPKEFTVPGSQSTAKITNLRPGTDYTVTVYAVTGRGDSPAS
STPIYVMHKTGVDSPSEMEVMEVNDNSVTVRWSPAQGPIKGYRVTGVPRNGQGQSFTEVV
APDQTEITFSGLMPTVEYVLSVYALGQNGESSPVVVNALTNIDRPKDMTFSDIDSTSLRI
TWDSPEGIVTSYRVLYSSSEEGERELRPAPRGDAESTIIYGLQPGTEYTVKVIAVHDDTA
STPLVGTQATAISSPTNLQFSQVSPTSFTMRWAVPGQENRLTGLTGLTGYRVVVNPKKKS
GPTKEINLAPDATQAHISGLMIATAYEVHVYALKNSLTSRPVQGEITTLEHISPPRRVRI
SDVNDSSITLTWRSKTETISGFLVEATPTTSSTGYVPIQRTTGPESRSFVLSGLEPGTNY
KINIYTLKGNGRSAPLTLTATTAKPLVIPPTNIQFTSLNPNSISFTWVPSRSPGVTGYYV
TYEEAGGLPREVLPRPHAGQSYAIINGLKPGTEYVIKIVALQNSLRSKSLVGKAKTQPAL
DHQLLVPELPQLPVPHRPTTDILDVPESFNDKIFDTNYVHLAGTGGQNQPGQQGQHIYTE
YQSLGPNNGLHGPFSGPREGQRPTLGEPLIYIPVAGPDGNRVPLVKVSEGPLPGLAFGFP
DNETEFPQEAQTITTISWSGIPQTSEYEVSCNPITHLEEKGFQMRLPGTSNSATLIGLTS
GASYNIVVEAMRGGSKEKVLEEVVTVGNAVPGDIPISTNRDVCFDTFTQTYHEVGSEWER
MSETGFKLWCSCLGLGSGHFRCDSSKWCHDNNNNYRIGEKWDRQAENGHMMSCTCLGNGK
GEFKCEPHESTCYDDGKMYHVGNQWQKEYLGAICTCTCYGGQQGWRCENCRRPGGHADMD
ADLIQPVHSDVFDRYRENALRKLNIQCPIECLRPELLADAIKINPLEYRRGDHE
NT seq
7545 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcagcaccatcgccagggtgctggttgcgctctgtatcgggagcgcggtgaac
tgcatgcccaaaggaacgcacaagagtcggcgacaagcgcagcagcatcagcgctcctcg
gtctctcaggatggttgtctcgagaatggtcagttctatggtattaacgaccagtgggac
cgtccatatttgggcagcattctggtctgtacctgctatggagtcgctggaatcaagtgt
aaaagcaaacctgaagcagaggaaaagtgctacgataagatcaaccagcagtcttacact
gtgggagcaacctacgagagacccaaggaaggcatgatctgggactgtacctgtatcgga
tcggggaggggcaagatcagctgcaccatcggcaaccgctgtcatgagggtggggcttca
tataagattggtgacacctggaggagaccccacgaaacaggaggctacatgttggagtgt
gtctgtctgggtaacggcaagggagagtggacctgcaaacctgtcgctgagcgttgctat
gacaactcagcgggcacatcctttgttgttggggagacgtgggagaagccgtaccagggg
tggatggtggtggactgcacctgtttgggagagggaagtggacgcatcacatgcacttcc
agaaatcgctgtaacgaccaggaaactctgacctcctaccgtattggagatacctggacc
aagacagacacccaaggccacacgctccagtgtctctgcactgggaacggccgaggggag
tggaagtgtgagcgacatgcttcacttcgtaccactggcctgggcactggctctcgtgtg
gtcactaacatccaccctgcggtctaccatcccgccactgttcctgagcttacccagaac
ggtccctgtcggacggacgcaggactttcgtactttattggccagcgctggatgagaaac
cagggaaccaagcagctgatctgtacctgtcttggcaatggagtcagctgcgaacaatgg
gatggaccggctccagtgtatggtggcaactccgatggtcagccctgtgtgtttcccttt
ctctacaaggggaagacctaccactcctgtatctctgatggacgcagtgatggacagctg
tggtgctccatctcctctgactttgagacggaccagaaatattctttctgtacagaaagg
aatgtaattatggggacacgaggcggtaactcgaatggtgctctgtgccagttcccctac
ctctataatggccgaaactacaccgactgtactgcagatggtcgtagagacggcatgaag
tggtgcggcaccacaacggactatgatggagaacagcgctttggattctgtcctatggct
gaccatgaagaagtgtgtacgaccagtgaaggggtgatgtaccgcacgggagagcagtgg
gacaaacggcacgatgttctggggcacatgatgcgatgtacctgcgtcggcaatggcaga
ggagaatggagttgtgttgcttactcccagcttaaagaccagtgtattgtggacggtctg
aactatgaggtgaaccaaaccttcaccaaacaacacgaggagggctacacgatgaactgc
acctgctttggacagggccgtggtcgctggaagtgtgacgccatcgatcagtgccaggag
ccggagacgagagccttctataagattggagagtcttgggataaagtcattcaaggaatc
atgtacaagtgctattgctatggcaacggcgtcggagagctcagctgcgagccccagcag
tcttaccccggtggtaatcgtcctgtccaggtgatcataactgaatctggaaagcaaaca
aactcccaccctattcagtggaacgcccctcaatctgctcacatcacccagtacatcctc
aagtggaaagtgaaaaacactcgtagctcatggcgagaggtgatgatccctggacatctg
aactcttacaccatctctggtctgaagccgggcatcacctacgagggtcagctcatcagc
gtgttgcggtttggacgccaagagctcacacgctttgacttcaccaccaattatggatca
ctggcgacatcacaaggcgaaaccactcaacctccgcctgtggttgacatctcagagtcg
gtgaccgaaattacctccagcagctttgtcatctcctgggtatccgcctccgacacagtt
tctggttttagagtcgagtatgagctcagtgagaatgggcagggaactggacatgccctg
gtggtcgacgtgccccatacagctacctcggtgaacattaatgagcttctacctggaagg
aagtacactgttaacgtctttgaggttacagatggcggcgatgacaatctcattctgact
acttcacaaactactgcacctgatgctccccttgagcatgacgtggaggaagtgggagaa
acttccatagtgatcagctgggaaaaaccactggctcccatcactggctatcgcgtcgtc
tacacgccatcattggaaggcgaaagcacggagctgactctccctgacacggcaacatct
gtgactctgagtgaccttctacctgggaagttgtacaacatcagtatctacgcggtggag
gacagcctggagagcgagcctatctttgtacaagtcaacactgctggagttccacagcca
gaagaagtttcctctcccacagacctgcagttcttcgaggtgtcagataataaaattgtt
ctgacctggaccggcccagccagcgccgtgtccggattccgggtcaccgccttcccagtc
gatgagtctggttccccacagagggagatgactctgcccgtcagtcaaaactcctacatt
gaagtgtcgcacctactgcctggcacactgtaccgcttcaacgtctacaccattcacaat
ggagaggaaagtttaccactcatcggggagcaaaccacaaagcctgatgctcccacagat
attcattttgccaatgtgactgaggacagtgctgtgatattgtggtttgcccctcgtgcc
aaaatcaccggctaccggctcttcctcaccattgagggctctaaccccaagcagctgcgc
ctgcctgcccgcctttctcagtatacccttctcaacctgaagcctgatagcgactacacc
gctacgctgcacgcagagcaggagaatacactgagtgaaggagagagcgccgtgtttacc
acgaatctgccaatgggcaacgcccctcacttcagcactgatgtgaccgacacctccatt
attatctcctggactccagttcccaacgttggatacaagttgacggtacgccccagtcag
ggcggagaagcccccagagatgtgacctctgactcaggaagtatttacgtttctggcctg
actccgggagtggagtacacctacagcgtccagccagttataaacggccacgagcaggga
accccaatcacacggcgtgttgtcacacctctgtctcctcccactgacctcaacctgcag
tctaacccaagcaccggagagctcatagtccaatggaacggagccagtacaccagacatc
actggctacaaagtgacatgcactcccaccaatgggcagcaaggaaacagtttggaggag
tttgtggaggctggtcagaactcctgcaccctggagaatctcagtccaggagtggaatac
aacatcagtgtggtaactgtaaaggacgacatggagagcactccgatatcaactaccatt
acgccagaagtcccaaagctgacggacctcaccttcatggacgtgagcgacaccaccatc
agtctcagctggtcaccgctcaacacgacagccatcaccggttacaggatcacagtggtg
gcagccggcgacagcgtccccatctttgaagacatggttctgtcaacgaccggccagtat
accgtctacggactggaacctggtatcgactatgacattagtgtgatcactgtgacggag
aacggcgagagcgagcccaccacagtcactcagaagacctctgtaccagcacccaccgat
ttgggctttgcccaggttgggccagacactatgcaagtcacctgggtcaatcccattgtc
cctaacatagctgacatcaacagcttcctcatcagatatcatcccattgatgatgaagat
gacattacagaaaccagtgcagaaggcgggagtaacaacgtggtgctaaggaacttgctg
cctaacacagagtatctggtgagcgtggtgtgtgtgtacgagcagagagagagctcgccc
ctcgtcggcacccagacaacagctctggattccccagttggtctgcgtttctctgagatc
ctcaccaactccttcaccctccactggctcgctccccagagcaaaatcaccggttaccgt
atccgttaccagatggtcagcggcgggaggaccaaggacgagaggctgcccccgtccagg
aaccacttcaccctgacgggactcactgcagacaccgaatactcggtcaacatctacaca
gtgagagggtccaaagagagtctgccgctcagcgggaaacagaagacgatctctgatgct
cccacagacctggaagtcctcgaatcctcccccaccagcatcaccgtccgctgggacgct
ccacctgtcactgtgcgctactacaggatcactcatggagagagtggaggtcacagtaat
cctaaggagttcacagtgcctggctctcagtccaccgccaaaatcactaacctgaggccc
ggtaccgactacaccgtcaccgtctacgctgtgactggtcgaggagacagccccgcctcc
agcactccaatctatgtcatgcacaagacgggtgttgactctccctctgaaatggaggtg
atggaggtgaatgacaacagtgtcaccgtgaggtggagccctgcccagggtccaatcaag
ggttacagggtgactggggtccccagaaatggacaggggcagtctttcactgaggtggtg
gctccagaccagactgagattactttctcaggactgatgcccacagtagagtacgttttg
agtgtgtatgctcttggacaaaatggagagagctctcctgtggtggtgaatgctttaaca
aatatagaccgtcccaaggacatgaccttctcagacatcgactccacctcactgcggatc
acctgggacagtcctgagggaatcgtcacatcttaccgggtcttgtattccagttcggag
gagggcgagagagagctgcgccctgctcctcgaggagacgctgagtcgactattatctat
ggtctgcaacccggcactgaatacacagtgaaggtcatcgctgtgcatgatgacacagcc
agcacaccactggtcgggacacaagctacagccatctcatcccccaccaacctccagttc
tcccaggttagccctacctctttcaccatgcgctgggcggtgccaggtcaggaaaaccga
ctaactggcctcacaggcctcacaggctaccgtgtggtggtgaacccaaagaagaagagc
ggccctaccaaggagatcaacttggccccagacgccacacaggcccacatatctggtctc
atgatcgcaactgcctatgaagtccatgtctatgccttgaaaaactctctgaccagcagg
ccagtccaaggagagatcaccaccctggagcatatcagcccccctcgtcgcgtccgtatc
tctgacgttaacgactcttccatcaccctgacatggcgctccaagacagaaaccatctct
ggcttcctggttgaggccactcccacaacctcctctacaggctatgtacccattcaaagg
accaccggccctgagtcgcgctccttcgttctttcaggtctggagccaggcaccaattac
aagatcaacatctatacactgaaagggaacggacgcagcgcacctctcacactcactgcc
accacagccaaaccgttagtcatcccgcccaccaacatccaatttacctccctgaacccg
aacagcatctctttcacctgggtgccatcacgcagtccaggggttacagggtattatgtc
acctatgaggaggccgggggtttgcctcgagaggttctccccagaccccatgcaggccag
agctatgccattatcaatggtctgaaaccaggaaccgagtacgtcattaagattgtcgca
ctgcagaattctttgagaagcaaatctctagtgggcaaagccaaaacacagccagctcta
gatcatcagctattggtccccgagctgccacagcttcctgttcctcaccgacccaccacg
gacatcctggatgttccagagtccttcaatgacaagatttttgacaccaactatgttcac
ctggctggcactgggggccagaaccaaccaggccagcagggccagcacatctatactgag
taccagagtctaggccctaataacggacttcatgggcccttcagtggacccagagaaggc
cagagaccgactctcggagaacctctgatctatattcctgtcgcaggccctgatggaaac
agagtacccttggtcaaggtgagcgagggtcccctgcctggtctcgcatttggtttccct
gacaatgaaacagagtttccccaagaagcacagacaatcacaaccatctcctggtctggc
attcctcagacttcagagtatgaagtgtcctgtaatcctattacacacctggaagaaaag
ggctttcagatgcgtcttcccggcacttccaacagtgccacactgattggattgacatcc
ggagcttcctataacatcgtagtagaggccatgaggggcgggtctaaagagaaggttttg
gaagaagtcgtgaccgttggcaatgctgttccaggtgacatccccatttccaccaaccgg
gatgtgtgtttcgacacattcacacagacgtaccacgaggtgggctcagagtgggaacgc
atgtctgagacgggcttcaagctgtggtgcagctgccttgggctgggcagcggccatttt
agatgcgattcatccaagtggtgtcatgacaacaataataactaccgcatcggagagaag
tgggatcgccaggctgagaacggtcacatgatgagctgcacctgcctgggcaatggcaag
ggagaattcaaatgtgaacctcatgagtctacatgttatgatgatgggaaaatgtaccat
gtgggaaatcagtggcagaaggaatacttgggcgccatctgtacctgtacctgctatgga
ggacaacagggctggcgttgtgagaactgcagaaggccgggaggacatgcggatatggac
gctgacctcattcaacccgttcattcagatgtcttcgaccggtacagagaaaacgcccta
cgcaaactgaacatccaatgtccgattgaatgtttgagaccggagctgcttgcagacgcc
atcaaaatcaaccccttggagtatagaagaggcgaccatgagtaa
DBGET
integrated database retrieval system
