Pseudoliparis swirei (Mariana hadal snailfish): 130202117
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Entry
130202117 CDS
T09868
Symbol
capn3b
Name
(RefSeq) calpain-3b isoform X1
KO
K08573
calpain-3 [EC:
3.4.22.54
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130202117 (capn3b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pswi01002
]
130202117 (capn3b)
Enzymes [BR:
pswi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.54 calpain-3
130202117 (capn3b)
Peptidases and inhibitors [BR:
pswi01002
]
Cysteine peptidases
Family C2: calpain family
130202117 (capn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
Calpain_u2
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
130202117
NCBI-ProteinID:
XP_056283353
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All DBs
Position
12:complement(12198223..12211161)
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AA seq
769 aa
AA seq
DB search
MGDKKRKVPVVEETKVRVLNETEASSGPDDKADYPSAGTNSIYSAILSRNEAVKDAKRLK
TFLELRDKYAKKKVLFEDPLFPANDSSLFYSQKPSMKFEWKRPPEVCEKPHFIIDGASRT
DICQGELGDCWLLAAIACLTLNEKLLYRVIPPDQSFTDNYAGIFHFQFWRYGEWVDVVVD
DRIPTCNNRLVFTKSFRKNEFWSALLEKAYAKLHGSYEALKGGNTLEAMEDFTGGVTEFF
ELSEAPKELFKIMRKALERGSLMGCSIDIFSATELETRTDQGLIRGHAYSIIGLAECDEV
AKDTRIQLIRLRNPWGFVLWKGPWSANSEEWSTISTADKDNLKKQTVEASEFWMSFDDFK
RNFTKLEMCNLTPDTLQGDERLSWTVSVNEGRWVRGSSAGGCRNSPQTFWTNPQYRLQLF
EEDDDPEVGQAACTVVVALMQKGRRMQRHQGAKFLTIGFSIYEVPKEMCGQNQHLQKDFF
LYTASKAKCKSYINLREVTERLHLPPGEYVIIPTTFEPHQDGEFILRVFSEKKSTSEEAE
DTIGSDKMQQDEKKRAKPIVFVSDRARANKEIEHDGIQGEKKKKPKRKLLQPEEETEEEK
QFRAIYQQIAGEDMQICANELKMIMRNVLAKHIEIKTEGFSLETCRSMIALMDTDGTGKL
NLQEFKHLWKKIKEWQMIFKRYDKDKSGSISSFEMRNAVNDAGLHLNKQLYDIIAMRYAD
ERLDIDFDSYICCFVRLEGMFRAFNAFDKDGDGIIKLNILEWLQLTMYS
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaagaaacgcaaagtgcctgttgtcgaagagacaaaggtgagagtacttaat
gaaacagaagcatcatccgggcctgatgacaaggccgattacccttctgctggcactaac
tccatctactcagccattctcagcaggaacgaggctgtcaaggatgccaagcgtctcaag
acttttttggaactgcgagacaaatacgcgaagaagaaggtgttgtttgaagaccccctg
ttccctgcaaatgactcctcgctcttctacagccaaaaaccttccatgaagttcgagtgg
aaacgtcccccggaagtttgtgaaaagccccatttcatcatagatggagccagcaggaca
gacatctgtcaaggagaattgggcgactgctggctgctcgctgccatcgcctgtttaacg
ctgaacgagaagctgctgtacagagtgattcccccggaccagagcttcaccgacaactac
gccggcatcttccacttccagttctggcgttacggcgagtgggtcgatgtggtcgtggac
gaccgcatccccacctgcaacaaccgtctcgtgttcaccaaatcgttcagaaagaacgag
ttctggagcgctcttttggaaaaagcgtatgccaagttgcacgggtcctatgaggctctt
aaagggggcaacactctggaggccatggaggatttcacaggcggagtgactgagttcttt
gagttgtccgaggcgcccaaagagctcttcaagatcatgaggaaggccctggagagaggc
tcgctgatgggctgctccatcgatatcttttcagccactgaactggagactcggactgac
cagggcctgatcaggggtcatgcctactccatcataggcctggcggagtgtgacgaggtg
gcgaaggacacccgaattcaactgattcgcttgcgcaacccctggggcttcgttctgtgg
aagggaccatggagtgcaaactcagaggaatggtcgaccatttccacagcagacaaggac
aacttaaaaaaacagactgtagaggcgagtgagttctggatgtcttttgatgacttcaag
aggaacttcaccaagctggagatgtgtaacttgacccctgacaccctgcagggggatgaa
cggctcagctggaccgtgtcagtcaatgagggtcggtgggtgagaggcagctctgctggc
ggctgcaggaactccccacaaacattctggacgaaccctcagtatcggctgcaactgttc
gaggaggatgacgaccccgaggtcgggcaggcggcctgtacggttgtcgtggcgctgatg
cagaaaggccggaggatgcagcgccatcaaggggcgaagttcctcaccatcggattttca
atctacgaggtgccgaaggagatgtgtggacagaatcaacacctgcagaaggacttcttc
ctgtacacagcctccaaagctaaatgcaagagctacattaacctgcgggaagtgacggag
cgtctgcatctgcctccaggagagtacgtcataatccccacgacctttgaaccgcatcaa
gacggagagttcattctgagggtgttctctgagaagaagagcacgtctgaggaagcggag
gacaccatcgggtctgacaaaatgcagcaagacgagaaaaagagagccaagccgattgta
tttgtgtcagacagagcacgagccaacaaagaaattgagcacgacggcattcagggggaa
aagaagaagaagccgaagcgaaaactcctccaaccagaggaggagactgaagaggaaaaa
cagttcagagccatctaccaacagattgccggtgaggacatgcagatctgtgccaacgaa
ctaaagatgatcatgaggaacgtactcgccaaacatattgaaataaagacggagggtttt
agcctcgagacgtgtcgcagtatgatcgcattgatggacactgacgggacggggaagctc
aacctgcaggagttcaagcacctgtggaaaaagatcaaggagtggcagatgatcttcaaa
cgatacgataaagacaaatccggctccatcagtagttttgagatgaggaacgctgtgaat
gatgcagggttacacctcaacaaacagctgtatgacatcatcgccatgcgttacgctgac
gaacgcctcgacatcgactttgacagttacatctgctgcttcgtgagactggagggcatg
ttcagagcttttaatgccttcgacaaagatggagatggaataataaagctcaacatcctg
gagtggcttcagctgacgatgtattcctaa
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