Pseudoliparis swirei (Mariana hadal snailfish): 130202141
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Entry
130202141 CDS
T09868
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130202141 (col18a1a)
00535 Proteoglycans [BR:
pswi00535
]
130202141 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130202141 (col18a1a)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130202141 (col18a1a)
Proteoglycans [BR:
pswi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130202141 (col18a1a)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130202141 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
130202141
NCBI-ProteinID:
XP_056283423
LinkDB
All DBs
Position
2:complement(18865382..18950301)
Genome browser
AA seq
1338 aa
AA seq
DB search
MTIRCPSRLARVLRCVLLLLLGSAASQWPEDTGVSLEQLIGDPPPDTVTRVYGPDYRSSY
VFGPESNTGQLARAHLPSPFYRDFALTFNLKPTTERGGVVFSVTDAAQEIMYVAVKLSAV
QGGNQNVILYYTEPDSQASYEAARFLVPSMVDTWTRFSIAVRDDTVKFYLNCDTDPQVVR
LERSPDEMELQSGAGVFVGQAGGADPDKFLGLISELRVVGDPRAARTHCEDDDDDSDMAS
GEGSGYEEPRSPQATGEKPRMTTPPPSSRPLQPPPLSNKDQVSVAGETGAAGGRGEKGER
GDAGLKGDRGPIGTKGDVRSGSRGGARGEKGEPGEIGLKGSAGFGYQGKKGDLGPPGRPG
SPGPPGPETKYSVNSDGSVSSRGPGPRGPPGATASQGQPGADGEPGDPGEDGKTGPDGPP
GFPGTPGDSGPTGAKGDRGDGQPGPRGLPGPPGTGHRSTFVDMEGSGFPDLDSIRGSPGL
PGPPGPPGPTGPANPSTAGAASSSGAFGPPGKDGAPGQPGLPGLPGMDGRPGALGTNGEK
GDLGDLGLPGAVGEKGSRGDNGLPGTPGLNGLAGLPGPLGPVGQPGPAGPPGPSYRVGFD
DMEASGGGFSNGLPGVTGPEGRQGSSGFPGLPGKAGLPGITGQKGSDGLTGRDGRPGLDG
FPGPQGPKGDGGNKGERGETGRDGTGLQGPPGPPGQIIYQTSDNVNGVVGNDGPQGGAGL
PGQAGFPGPIGPKGDRGDPGLPGYGGKGEKGEPGLVIGPDGNLLHLEGLTGSKGERGIPG
PVGPSGHYGPSGIKGEMGMPGRPGRPGVNGYKGDRGETGVGYGYPGVPGQPGPPGPPGPT
VPLDRFNRFDETSRNYPATKGEKGEGGDRGIPGIPGTASNFDIYTFKNELKGERGGVGVK
GERGEPSGGYYDPHFGGAQGPAGPPGKPGLQGPKGEPVSGPPGPQGPPGTPGIGYDGRQG
PPGSPGPPGPPSLPRAYRPDHSLNVPGPPGPPGAPGSPGHSSGVTVLRSYDTMMATARRQ
TEGSLIYVLDKADLYLRVRDGLRQVMLGDYSPFFRDLENEVAAVQPPPVIQYPQSQDQSH
NNGAGHYSQGGSAIRPIEPPPHPPVDPRYPPQYDPRFPDPRHTGQTDGRLATQQTENRYP
VTPQRRPSPPVVQPASHVEPPESGLHIIALNAPQTGNMRGIRGADFLCFQQARAVGLKGT
FRAFLSSKLQDLYTIVRRSDRDSTPIVNLKHQVLFSSWESLFGDVSKMNENVPIYSFDGR
DIVRDSAWPEKMVWHGSSNKGHRQTDHYCETWRASDHAVTGLASSLQSGHLLQQTSSSCS
GSYIVLCIENAFTSPSKK
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcaggtgtccctcgcggctggcgcgcgtcctgcgctgcgtgctgctgctgctg
ctcggctcggcggcgtcgcagtggccagaagacactggagtctccctggaacagctgatt
ggggatcctcctcccgatacggtcacccgggtctacgggcccgactacaggtccagctat
gtctttggccccgagtccaacacgggccagctggcccgcgcccacctgccgagcccattc
taccgagacttcgccctcaccttcaacttgaaacccaccactgagcgcggcggcgtcgtc
ttctccgtcacggacgccgcgcaggagatcatgtacgtggccgtgaagctgtccgccgtg
cagggcggcaaccagaacgtcatcctgtactacacggagcccgactcgcaggcgtcgtac
gaggcggcccggttcctcgtgccctccatggtggacacctggactcgtttctccatcgct
gtgagggacgacacggtgaagttctacctcaactgtgacacggaccctcaggtggtgcgc
ctcgagaggtccccggacgagatggagctgcagagcggcgccggggtctttgtcgggcag
gctggaggagcggatcctgacaagtttctgggtctgatcagtgagctgagggtggtggga
gacccccgtgctgcccggacgcactgtgaagacgatgacgacgactcagatatggcttca
ggggaaggaagcggctatgaagaacccagatccccacaagcaaccggggagaagcccaga
atgacgactcctcctccatcttctcggccccttcagccgccgccgctgagcaacaaagac
caagtctcagtcgcaggagaaaccggtgcagccgggggcagaggagagaagggcgagcga
ggggacgcagggctgaagggagacagggggccaatcgggaccaagggggacgtccgctcc
ggctcccggggtggagcccgcggagagaagggggaaccgggggaaataggattaaagggc
agtgcaggctttggctaccaaggaaagaagggagacctcggcccgcctgggcgacccggt
tcccccggccctccaggccccgagaccaagtactcggtcaacagcgacggctcggtttct
tccaggggccccggaccccgaggaccgccaggtgctacggcctcccagggacaaccagga
gctgatggagagccaggggatcccggtgaggatggaaaaaccggtcctgatggaccacct
ggcttcccaggaaccccaggggactctggaccaacaggagcaaagggagaccgtggagat
ggtcaacctggccccaggggactccctggacctccaggaaccggacacagatctactttt
gtggacatggaaggctctgggttccctgatctggactccatccggggatcgcctggtcta
ccgggtcctcccggtccccccggccccaccggtccagctaatccctcgacagcgggagca
gcatcgagttctggggcgttcggaccaccaggaaaggacggggcgcccggtcaacctggc
ttgcctggtttgccggggatggatggacgtccaggagctctcggtaccaatggagaaaag
ggtgatttaggcgatctgggtcttccaggagctgtcggagagaagggatctcgaggagat
aacggtttaccgggaaccccaggactgaatggactggctggtctgcccgggcctctggga
ccagttgggcaaccagggcctgcggggccccccggaccaagctatcgtgttggatttgat
gacatggaggcctctggtggagggttcagcaatggactgcctggcgtcacaggacccgag
ggaagacagggttcttctggcttccctggacttccgggaaaagctgggttgcctggtata
acaggtcagaagggcagcgacgggctcacaggaagagatggacgtccagggttggacggc
ttccctggacctcagggaccaaagggtgacggtggcaacaaaggagaaaggggggaaacg
ggtcgagatggaacaggcctccaagggccacccgggccacctggacaaatcatctaccag
acatctgacaacgttaatggtgttgttggcaatgatggaccccagggaggagctggttta
cctggccaagctggtttccctggtccaattggaccaaagggtgacagaggggaccccggc
cttccaggctacgggggaaagggggagaaaggtgaaccgggcctggtaatcggacctgat
ggaaaccttctgcatctggaagggctgacgggttccaagggagagagaggaatacctgga
cctgttggaccctctggccattatgggccttctggaataaagggggaaatgggaatgcct
ggaagaccaggtcgccctggtgtaaatggttacaagggtgacagaggagagacaggagtc
ggttatggctacccaggagtccctggccaaccaggaccacctggaccccccgggccaacc
gtgcccttagatcgcttcaaccgctttgatgaaacttcaaggaattacccagcaactaaa
ggggaaaaaggagagggaggggaccgaggaattccaggaatcccaggaaccgcctctaat
ttcgatatttacacattcaagaatgaactgaagggagagcgcggcggcgtcggtgtgaag
ggagagaggggcgagccgagtggcggatattacgacccacattttggaggagcacaaggc
ccggcagggcctcctggcaaaccaggcttacagggtccaaagggagaacctgtatcgggc
cctcctgggccccagggaccaccaggaacaccagggattggttacgacgggcgccaaggt
cctccaggatcacccggacctcccggacctccctcacttcccagagcgtatcggcccgat
cactccctaaatgttcccggacctcccggtcctcctggtgcccctggaagtcctggtcac
tcgtctggggttactgttttaaggtcatacgacacaatgatggcgactgcgagacgccag
actgagggcagcctcatctacgtcttggacaaagcagacctctatttgagagtgcgcgat
ggactgcggcaagtcatgcttggagactacagtcccttcttcagagatctggagaacgag
gtggcagcggtccagcctccacctgtgatccagtacccccagtcccaggaccagtcccac
aacaacggagcgggccattactcccaggggggttcagccatacggccgattgagcctccg
ccacacccgcccgttgaccccagataccccccacagtatgatcccagattcccggacccg
agacacacaggccagacggatgggagattagccacgcaacagactgagaacagataccct
gtcactccacagcggcgacccagcccacctgtggtgcagcctgccagtcatgtggagccc
cccgaatccggactccatatcatcgccttgaacgcccctcagaccgggaacatgcgggga
atccgcggggcagacttcctgtgcttccagcaggcccgcgccgtgggcctgaagggcacc
ttcagagccttcctgtcctccaagctgcaggacctctacaccatcgtccgcaggtcggac
agggacagcacccccatcgtgaacctcaagcaccaagtgttgttcagcagttgggagtct
ctctttggggacgtgagcaaaatgaatgagaacgtaccgatctactccttcgatggcaga
gacatcgtcagggacagcgcatggccagagaaaatggtctggcacggatcgagcaacaaa
ggccaccggcaaacggaccactactgcgaaacatggcgggcgagcgaccacgccgtgacc
ggcctggcctcatcactacagagcggccacctcctacagcaaacctccagcagctgctcc
ggctcctacatcgtcctctgcatcgagaacgcctttacgtcaccctccaaaaaataa
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