Pseudoliparis swirei (Mariana hadal snailfish): 130202270
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Entry
130202270 CDS
T09868
Symbol
extl3
Name
(RefSeq) LOW QUALITY PROTEIN: exostosin-like 3
KO
K02370
alpha-1,4-N-acetylglucosaminyltransferase EXTL3 [EC:
2.4.1.223
2.4.1.224
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
pswi01100
Metabolic pathways
Module
pswi_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
130202270 (extl3)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pswi01003
]
130202270 (extl3)
Enzymes [BR:
pswi01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.223 glucuronosyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
130202270 (extl3)
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
130202270 (extl3)
Glycosyltransferases [BR:
pswi01003
]
Glycan extension
O-Glycan
130202270 (extl3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin_GT47
ADIP
MscS_porin
TPR_MLP1_2
EXOC6_Sec15_N
TBK1_CCD1
DUF1664
Motif
Other DBs
NCBI-GeneID:
130202270
NCBI-ProteinID:
XP_056283632
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Position
12:13234496..13269166
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AA seq
914 aa
AA seq
DB search
MQRNGGGGGAGGQPWVLRRVRLTWLSFMLFFILVFFPLIAHYYLTTIDEAGGPDKRIFGP
RPGGXCEAKHVQDLCRIRESVSEELLQLEAKRQELNGEIARLNLRIEACKRSIDSAKQDL
LQLKNVISQTEHSYKELMAQNQPRLSLPVRLLPDKEDLGLPPPKSARSCRLRSCFDYARC
PLTSGFPVYVYDTGSYQWADYLDPLVKQAFAASVKSNIYITDNPSIACLYVVLVGELQES
SSPPPSPLELEKQLKALPYWRSDGHNHVLVHFSRKSMTQNFLYNVSTGRAAVAQSTFLEQ
QYREGFDLVLSPLVHALAEPNFLEVPPQVPVKRKYLFTFQGERVESLRSSLQEAPPQSFE
EEMEGDPPADYDDRIIGTLKAVQDSHLDQVLVEFTCKNPQPSLPTEWALCGEREDRLEVL
KASTFGLVISPGDGHLVASAGCGMRLFEALEVGTIPVVLGDHARLPYHQFIRWSEAAIIV
PKPRVTELHFLLRSLSDNDMLAMRRQGRFLWETYFSTTENVLNTLLASIRTSVQVPAAPI
KEEPAHEIPHKAGKMAGTDANLADNGDLDLGPVETEPPYASPRFLRNFTYTVSDTYRAWN
RAPGPFHLFPHTPLDPVLPSEAKFLGSGTGFRPIGGGTGGSGKEFQAALGGNVPREQFTV
VMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPKPPSDDLLWPDIGLPIVVVRTEKNSL
NNRFLPWDTVETEAILSIDDDAHLRHDEIMFGFRVWREARDRIVGFPGRYHAWDVNHQSW
LYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQAIRDMVDDYINCEDIAMNFLVSHITR
KPPIKVTSRWTFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFK
TRLPHDKTKCFKFI
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtaacggtggcggggggggcgccgggggccagccatgggtgctacgccgtgtg
cgtctaacctggctcagtttcatgctcttcttcatcctggttttcttcccactcattgcc
cactactacctcacgaccattgacgaggccgggggtcccgacaagcgcatcttcgggccg
cggcccggcggcntgtgcgaggccaaacatgtgcaggacttgtgccgaatccgcgagtcg
gtcagcgaggagctgctgcagctggaggccaagaggcaggagctcaacggggagatcgcc
cgactcaacctgcgcatcgaggcctgcaagcgaagcatcgacagcgccaagcaggacctg
ctgcagctgaagaacgtgatcagccagacggagcattcctataaagagctaatggcccag
aaccagccacggttgtccctaccagtccggctgctgccagacaaggaggacctgggactg
ccgccacccaagtctgcccgctcctgccgcctccgctcctgctttgactatgcgcgctgc
cctcttacttctgggtttcctgtgtatgtctacgacacaggctcctatcaatgggcagat
tatcttgacccactggtgaagcaggcttttgcagcatcagttaagagcaacatttatata
accgataaccccagcattgcttgtctgtatgtagtgctggtaggggagctacaggagtcc
tcctccccaccgccatctcctttagagctggaaaagcaactcaaagctctcccttactgg
aggtctgatgggcacaatcatgtactggtgcatttctccagaaagtccatgactcagaac
ttcctctataatgtgagcacaggtcgggcagcagttgctcagtccaccttcctggagcag
cagtaccgcgagggctttgacttggtcctttccccactggttcatgcactcgccgaacct
aattttttggaagtgccccctcaagttcccgtaaagaggaaatacctcttcaccttccag
ggggagagggtggagtcactgaggagcagcttacaggaggcgccccctcagtctttcgag
gaggaaatggaaggagacccaccagccgactacgacgatcgcatcatcggcaccttgaag
gcagtgcaggacagccacttggaccaggtgctggtggagttcacgtgcaagaacccacag
ccgagtttgcccacggagtgggctctctgtggagagagggaggaccggctggaggtcctc
aaggcttcaacttttggcttggtgatttccccaggggacggacacctggtggcctcagca
ggctgtgggatgaggctctttgaggcccttgaagtagggaccattccagtcgtgctaggg
gaccacgccagactaccatatcaccagtttattcgctggagtgaagcagccattatcgtc
ccaaagcctcgtgtcacagagctacacttcctgctacgcagcctatcggacaacgacatg
ttggcgatgaggcgtcagggccgcttcctgtgggagacctacttctccaccacggagaat
gttcttaacaccctcctggccagcatcagaaccagcgtccaggttcctgccgcacccatc
aaagaagagcccgcccacgagattccccacaaagcggggaagatggcaggaacggatgcc
aacctggctgacaacggtgatctggatttgggtcctgttgagacagagcccccctacgcc
tctccacgcttcctccgcaacttcacatacacagtttcagacacttatagagcgtggaac
cgggccccggggcctttccatctgttccctcacactcctctggaccctgtgctgccgtct
gaagccaaattccttggctcgggtactggctttaggcctattggtggaggtacgggaggc
tcggggaaggagttccaggcagctctcggaggaaatgtgccccgagaacaattcaccgtg
gtgatgctgacttatgagagggaggaggtgctgatgaactctctggagagactgaatgga
ctgccgtacctcaacaaggtagtggtggtgtggaactcgccaaagcctccttcggatgac
ctgctgtggccggacatcggcctgccgattgtggttgttcgcacagagaagaacagcctc
aacaaccgctttcttccctgggacaccgtggaaaccgaggccatcctgtcgattgacgat
gacgctcatctccgccacgacgagatcatgttcgggttcagagtgtggcgtgaggccaga
gatcgcatcgtgggtttccccgggcggtatcatgcgtgggacgtgaaccaccagtcctgg
ctgtacaactccaactactcctgtgagctctccatggtcctgacgggagcggctttcttc
cataagtactacgcctacttgtactcctacgtgatgccccaagccatcagggacatggtg
gacgactacataaactgcgaggacattgccatgaacttcctggtctcgcacatcacccgc
aaaccacccatcaaggtgacatcacgttggaccttccgctgtcccggctgccctcaggcg
ctctcgcacgacgactcgcatttccacgaacggcacaagtgcatcaacttcttcgtcaag
gtgtacggctacatgccgctgctgtacacgcagttccgcgtggactcggtgctgtttaag
actcgtttgccccacgacaagaccaagtgcttcaagttcatctag
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