Pseudoliparis swirei (Mariana hadal snailfish): 130202286
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Entry
130202286 CDS
T09868
Symbol
dtl
Name
(RefSeq) denticleless protein homolog
KO
K11790
denticleless
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130202286 (dtl)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130202286 (dtl)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR19_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
TAF1C_beta-prop
WDR54
Slr4
Motif
Other DBs
NCBI-GeneID:
130202286
NCBI-ProteinID:
XP_056283668
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All DBs
Position
12:12358358..12364544
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AA seq
659 aa
AA seq
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MLFRSIVNRGVGRRRLNGLPVDPRPRYPLSSLLGGFECVRHDEHISYGNVGDSVPPFGLA
FSSVVHMQSILAVANEEGIVRIYNTESRDKPVLKEWLAHENAVFDIAWVPGEPHLVTAAG
DQMARLWDVNSGELLGSFKGHLCSLKSVAFTPWEKAVFSTGARDGNIMIWDTRCSKKDGF
YRQVNQISGAHNKAETNAPTKTKKRRGSTRGMAPSVDTQQSVTVVLFRDQHTLISSGAVD
GVIKMWDLRKNYTALRQDPVPLQTYPYPGSCMRVRLGYSGLVLDSTRSNIISNCTDDNIY
MFNVSGMKTTPVAVFSGHQNSSFYVKSTISPDDQFLASGSSDNNAYVWKISDPKHPPMML
QGHSEEVTSVSWCPTDFTKIASCSDDHTVRIWRLHREMDGAQSSVGEANLVGWARPKSLL
RPSIRAETTPAKKQRTESLGGLASPQLAACAPSGAALPLPSSTTSSIPSQGATTAAAIRQ
RTPSSIKQWLSLSCGSPGQVSPLACRVLSPCPQSPASSTSPTERRAKRRLETGAGASAGC
EGAEQCDCVTELYPAGKRSRALSGICCPAQESRLQTDGHTEDNKQVSSRQTGKENYSPTE
KDWLSAMGQKMRKGQGSPRTSRSPSTSKKQDRKTVASPTICSPQTMKKISVYFTRRALE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcttttccgctcaatcgtgaacagaggagtgggcagacgaagacttaacggcctccct
gtggacccccggcctaggtaccctctgagctctctgctgggaggcttcgagtgtgtccgg
catgatgaacacatctcctatggcaatgtgggggactctgtgccgccatttgggttggcc
ttctcctctgtggtgcacatgcagagcatccttgcagtagctaatgaagaaggcattgtt
agaatctacaacacagagagccgtgataagccggttctcaaagaatggctggctcatgag
aatgctgtctttgacatagcctgggtaccgggggagcctcacttggtgactgctgctggt
gatcagatggccaggctgtgggacgtgaactctggggagctgttgggcagcttcaagggt
cacctctgtagcctcaagtctgttgcattcacaccctgggagaaagctgtgttctcaact
ggagcccgagatggaaatattatgatctgggacaccagatgcagcaaaaaagatggtttc
tacagacaggtgaaccagatcagtggcgctcataacaaagcagagacgaacgctcccacc
aaaacaaagaagaggcgcggtagcacacgtggcatggcccccagtgtggatacccagcag
agtgtcacagtggttttgtttcgggatcagcacaccctcatctcttctggggctgttgat
ggagtgatcaagatgtgggatctgaggaagaactacactgcgctccgtcaggatcctgtt
ccactgcagacgtacccatacccgggttcttgcatgcgcgtgcgtctgggttattccgga
ctagttctcgactccacaagatccaacatcataagtaactgtactgatgataatatctac
atgttcaatgtcagtggaatgaaaacaactccagtggctgttttcagcggccaccagaat
tcctcattttatgtgaagtccactattagcccagatgaccagttcttggccagtggttca
agtgacaataacgcatacgtctggaagatctctgatcctaaacaccctcccatgatgctc
caaggccacagcgaggaagtgacatctgtttcctggtgcccgactgattttacgaagatt
gcctcctgttctgatgaccacactgtacggatctggaggcttcaccgggaaatggatgga
gcacaatcctcagtgggagaggccaaccttgtaggttgggcacgtcctaaatctctctta
aggccttctatcagagctgaaacaactcctgccaagaagcaaaggacagagagtctcgga
ggcttggcgtcaccccagctggctgcctgtgctcccagtggagcggccttgcctctgccc
tccagcaccacctcatccatcccttcgcagggtgctactacggctgctgcgattcgccag
agaacaccctcttctatcaaacagtggttatccctgagctgtggatctcctggtcaggtc
agccctctggcctgtcgggtgctgagtccgtgtccccagagcccggcgagcagcacctct
cccacagaacgacgggccaaacgcaggctggagaccggtgccggtgcatctgcaggctgt
gaaggggccgaacagtgtgactgtgttactgaactctaccctgcaggcaagagaagccgg
gccctgtctgggatctgctgccctgctcaagagagccggctacaaacagacggtcacaca
gaggacaacaagcaagtctcatcaagacagacgggcaaggagaattactctcccacagag
aaggactggttgtcagcgatgggccaaaagatgaggaaaggtcaaggaagccctcgtact
tccagaagccccagcacctctaagaaacaagatcgcaagacagtagcttcaccgaccatc
tgctcaccacaaaccatgaagaaaatctctgtgtatttcacaagaagggctctggagtga
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