Pseudoliparis swirei (Mariana hadal snailfish): 130202370
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Entry
130202370 CDS
T09868
Symbol
gja1b
Name
(RefSeq) gap junction alpha-1 protein
KO
K07372
gap junction alpha-1 protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04540
Gap junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04540 Gap junction
130202370 (gja1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130202370 (gja1b)
Transporters [BR:
pswi02000
]
Other transporters
Pores ion channels [TC:
1
]
130202370 (gja1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Connexin
Connexin43
Connexin40_C
TEX29
Ammonium_transp
Motif
Other DBs
NCBI-GeneID:
130202370
NCBI-ProteinID:
XP_056283835
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All DBs
Position
12:21281431..21287364
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AA seq
399 aa
AA seq
DB search
MGDWSALGRLLDKVQAYSTAGGKVWLSVLFIFRILVLGTAVESAWGDEQSAFKCNTQQPG
CENVCYDKSFPISHVRFWVLQIIFVSTPTLLYLAHVFYLNRKEQKFNRKEELLRAVQNDG
GDVDIPLKKIEMKKLKYGIEEHGKVKMKGALLRTYVVSILFKSMFEVGFLVIQWYIYGFS
LDAVYTCERDPCPHRVDCFLSRPTEKTVFIIFMLVVSLVSLMLNVIELFYVFFKRIKDRM
KGRQPPVVYPSGNTLSHTPKDPSAAKYAYYNGCSSPTAPRSPLSPPGYKLATGERVGGGG
GGTGSCRNYSKQAAEQNWANYSTEQHRPGQNGGGGGGSTISNSHAQAFDFPDDTQEHKKL
PPPPPAAHEMQPLALMDARPCSRASSRMSSRPRPDDLDV
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggtgactggagcgctctgggccgcctgctggacaaggtccaggcctactccaccgcc
gggggcaaggtctggctgtcggtgctcttcatcttccggatcctggtcctgggcaccgcc
gtggagtcggcgtggggagacgagcagtcggcgttcaaatgcaacacgcagcagcccggc
tgcgagaacgtgtgctacgacaagtccttccccatctcccacgtgcgcttctgggtcctc
cagatcatcttcgtgtcgacgcccaccctcctgtacctggcgcacgtcttctacctgaac
cggaaggagcagaagttcaaccgcaaggaggagctgctccgcgccgtgcagaacgacggc
ggcgacgtcgacatcccgctgaagaagatcgagatgaagaagctcaagtacggcatcgag
gagcacggcaaggtcaagatgaaaggcgccctgctcagaacctacgtcgtcagcattctc
ttcaagtccatgttcgaggtgggcttcctggtcatccagtggtacatctacggcttcagc
ctcgacgccgtgtacacctgcgagagggacccgtgcccgcacagggtggactgcttcctg
tcgcggcccacggagaagacggtgttcatcatcttcatgctggtggtgtccctggtgtcc
ctgatgctcaacgtcatcgagctgttctacgtgttcttcaagaggatcaaggaccgcatg
aagggccgccagccgcccgtcgtctaccccagcgggaacacgttgagccacacccccaaa
gacccgtccgccgccaagtacgcctactacaacggctgctcctcgcccacggcgccgcgg
tcgcccttgtccccgccgggctacaagctggccacgggggagcgcgttggcggcggcggc
ggcggcaccggctcgtgccgcaactacagcaagcaggccgccgagcagaactgggccaac
tactccacggagcagcaccggccgggccagaacggcggcggcggcggcggcagcacgatc
tcaaactcccacgcgcaggccttcgacttccccgacgacacgcaggagcacaagaagctg
ccgccgccgccgccggccgcgcacgaaatgcagccgctggcgctgatggacgccaggccg
tgcagccgggccagcagccgcatgagcagccgacccaggcccgacgacctggacgtgtga
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