Pseudoliparis swirei (Mariana hadal snailfish): 130202446
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Entry
130202446 CDS
T09868
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130202446 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130202446 (hbs1l)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130202446 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
130202446
NCBI-ProteinID:
XP_056283966
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Position
12:7407797..7425461
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AA seq
702 aa
AA seq
DB search
MSRHRNVRGYNYDEDFDDDDVYGQSVDDDYCISPATANQFIYSRQERQAPKEEPLEEEED
DVPMSPIISHNLDPLDQAKLYSCLDHMRTVLGDAVQDSVLTQAAVNCGFDPQKALDAVLS
EDTKTVQLTKSTSEETASVARVSLEKAPLPQRIKPEAVDEKAKSRDASDDKLDSEVVPKV
ARMTISGKKQTMGFDVPSTGENGVAAASGRRGRSPEGATTTPSTTPSVTPSKRPETASRG
SNGEEAFSVPTPSRSFGKARQSIDIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLY
LLGNVNKRTMHKYEQESKKAGKASFAFAWVLDETGEERDRGVTMDVGMTKFETNSKVVTL
MDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLA
VAVNKMDQVNWQQDRFKDITSKLGHFLKQAGFKESDVFYVPTSGLSGENLATRSSVSQLT
SWYSGPSLLEQIDTFKAPQRSVHKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQAGERILV
MPPNETCTVKGITLHDEALNWAAAGDHVSLTVTGMDIIKINVGCVFCDIREPIRACTRFR
ARILLFNIELPITQGFPVLLHYQTVSEPATIRKLISVLHKTSGEVLKKKPKCLSKGMNAI
VEIQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKQ
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcaccggaatgtgcgaggttacaactacgatgaagactttgacgacgatgac
gtgtatggacagtctgtggatgatgattactgcatatcaccggcaacagcaaatcagttc
atctactctcgtcaagagaggcaagcaccaaaagaggagcctttagaagaggaagaagat
gatgtacccatgtcccctatcatcagccacaaccttgaccctctcgaccaagccaagctg
tattcctgtttggatcatatgcggactgtgctgggagatgcagtgcaggactcagtcctg
acccaggccgccgtaaactgtggattcgacccacagaaggcactggatgccgtcctgtct
gaagataccaagacggtccaacttaccaaaagtaccagtgaagagacggcttcggtagcc
agagttagcctggagaaagcgccgcttccacaaagaatcaaaccagaggccgtggatgaa
aaagctaaaagcagagacgcgtctgacgataaactggactctgaagtggtccccaaagtg
gcccgcatgaccatctctggcaagaagcagaccatgggctttgatgttcccagcactggg
gagaacggcgtcgccgccgcttcgggacgccgcggccgcagccccgagggcgccaccaca
accccgtccacaaccccgtccgtaaccccgtccaagcgtcccgagactgcgtccagaggg
tcaaatggagaagaggccttctcggtccccacaccgagccgctccttcggaaaggcccgg
cagtcgatcgatatcaaagctgagctggagaagaggcaggggggaaaacctctgttaaat
ttggtggttataggtcacgtggacgcgggcaaaagcacactgatgggccacctgctctat
ctgctgggcaacgtgaacaagcgcaccatgcacaagtatgagcaggaatcaaagaaggcc
ggcaaagcctccttcgcctttgcttgggtcctggacgaaactggcgaggagagggacagg
ggcgtgacgatggatgtgggcatgacgaagtttgagacgaactctaaggtggtgaccttg
atggacgcaccaggacacaaagacttcatccccaacatgatcacaggagctgcacaggcc
gacgtggcggtgctcgtggtggatgccagccgaggggagttcgaggcgggcttcgaggcc
ggtggtcagaccagagagcacgccctgctggtgcgctcgctcggtgtcactcagctggcc
gtcgctgtcaacaagatggaccaggtaaactggcaacaagaccgtttcaaagacattact
tccaagcttggccatttcctcaagcaggcgggattcaaggagtccgacgtgttctacgtc
cccaccagcggcctgtcaggagagaacctcgccaccaggagttcagtgtcgcagcttacc
tcttggtactctgggcccagcctgctggagcagattgataccttcaaagctcctcagaga
tccgttcacaaaccgttcagactgtgcgtctccgacgtgttcaaagaccagggttcaggc
ttctgtgtcacaggaaagattgaggctggttacattcaggcaggagagagaatactggtg
atgcctcccaatgagacctgcactgtcaaaggtattactctccacgatgaggccctgaac
tgggctgcagcgggagatcatgtcagcctgacagtcaccggcatggacatcatcaagatc
aatgtgggctgcgtgttctgtgatatcagggagccgattcgagcctgcactcgattcaga
gcgcgaatccttctcttcaatattgagctccccatcacgcaaggatttccagtattgctc
cactaccagacggtaagtgagccggccaccattaggaaactgatcagtgttctccacaag
accagcggcgaggtcctcaagaagaaaccaaagtgtttgagtaaaggtatgaacgccatc
gtggagatccaaacccagaggccggtgtcactagagctgtacaaagactacaaagagctc
ggccgcttcatgctccgatacgtcggctccaccatcgctgccggagtcgtcactgagatc
aaacagtaa
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