Pseudoliparis swirei (Mariana hadal snailfish): 130202569
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Entry
130202569 CDS
T09868
Symbol
lrfn5b
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130202569 (lrfn5b)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
130202569 (lrfn5b)
BRITE hierarchy
Motif
Pfam:
LRR_8
I-set
Ig_3
LRR_4
LRR_1
LRR_5
ig
Ig_2
LRR_9
fn3
Sp38
C2-set_2
Ig_C17orf99
SWI-SNF_Ssr4_C
Motif
Other DBs
NCBI-GeneID:
130202569
NCBI-ProteinID:
XP_056284203
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All DBs
Position
12:complement(4601943..4617910)
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AA seq
791 aa
AA seq
DB search
MEYLLLYLLVGVGAAPKAHKAQVCPKRCVCQVLNPNLATLCDKKGLLFVPPDIDRHTVEM
RLGDNFVTGIKRRDFANMTKLVDLTLSRNTIGSIAPLAFRDLENLRALHLDSNRLSRIVN
DTFSGMSKLHHLILNNNQLTHIQTGAFDDLTALEELDLSYNNLESAPWPAIQRMASLHTL
NLDHNMLRYIPEGTFSGLQKLKRLDVTSNKLQKLPPDPIFQRAGVLATSGAMGPMSFALS
FGGNPLRCNCELLWLRRLRREDDLETCASPQHLAGRYFWTVSEEEFLCEPPLITRHSQEL
RALEGQRVTLRCKARGDPDPIIHWIAPDGRLMSNSSRAAVHTDGTLDILISTVKDSGSFT
CVASNPAGEAQQMVDLVIAKLPHIANNTVAEQEPDPGSSDIATVTKTGADGGGGSPSLGN
AKTSQEKKVVISEATSTSAMVQFNFQRSIPGIRMFQIQYNGSYDDSLVYRMIPPTSKSIL
VNNLAAGTQYDLCVLAIYDDQVTSLTATRVIGCIHFTTEPQYLRCHFMQSQFLGGTIVVI
IGGIIVASVLAFIIFLIVRYRVCNHGDADKALEMGDICSLSSDGQLQGCGIPKSFSKQVL
RPEKSEKECLKMSLPPPEPTKQRPAAAAAGAKPSVPDCTVSTSAASHSWHPASPNAPRPK
RFSAPPKPSEAQADVELDNANRNNSSEVKTVAGRPAEWTAVPRGPRPRPGPQHYMTVPAG
GARGGNRRHSLNADSHGERRCAAARLKPGAGLRSKRSLSMSGELPQPEGPTNMRRARDKL
SKSEWLLESTL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggagtacctcctgctctacctgctcgtcggcgtcggcgcggcgccgaaggcccacaaa
gctcaggtgtgccccaagcgctgcgtctgccaggtgctcaaccccaacctggccaccctg
tgcgacaagaagggcctcctcttcgtgccgcccgacatcgaccggcacacggtggagatg
cgcctcggggacaacttcgtcacgggcatcaagcgcagggacttcgccaacatgaccaag
ctggtggacctgacgctgtcgcggaacaccatcggctccatcgcgccgctcgccttcaga
gacctggagaacctgcgcgccctccacctggacagcaaccggctgtcgcgcatcgtcaac
gacaccttcagcggcatgtccaagctgcaccacctcatcctcaacaacaaccagctcacg
cacatccagaccggcgccttcgacgacctgacggcgctggaggagctggacctgtcctac
aacaacctggagagcgcgccgtggcccgccatccagaggatggccagcctccacacgctc
aacctggaccacaacatgctcaggtacatcccggagggcaccttctccgggctgcagaag
ctcaagaggctggacgtgacctccaacaagctgcagaagcttcccccggaccccattttc
cagagggccggggtcctggccacctcgggggcgatggggcccatgtcgttcgcgctgagc
ttcgggggaaacccgctgaggtgcaactgcgagctgctgtggctgcggaggctgaggagg
gaggacgacctggagacctgcgcgtcgccgcagcacctcgccgggcgctatttctggacc
gtttcggaggaggagttcctgtgcgagcctcctctcatcacccggcactctcaggagctg
cgagctctggagggtcagagagtgaccctgcgctgtaaggccaggggcgaccccgacccc
atcatccactggatcgcccccgacggccgcctcatgtccaactcctccagggccgccgtc
cacacggacggcacgctggacatcctcatcagcaccgtcaaggactctggttccttcacc
tgcgtggcctccaacccggcgggggaggcgcagcagatggtggatctggtcatcgctaag
ctcccccacatcgccaacaacacggtggcggagcaggagcccgaccccgggtcgtcggac
atcgccacggtcaccaagacgggcgcggacggcggcggaggctcgccgtccctggggaac
gccaagacgagccaggagaagaaagtggtgatctccgaggccacgtccacctcggccatg
gtgcagttcaacttccagaggagcatccccggaatacgcatgtttcagatacaatacaac
ggcagctacgacgattcactggtttacagaatgatacccccgaccagcaagagcatcctg
gtgaacaacctggcggcgggcacgcagtacgacctgtgcgtgctcgccatctacgacgac
caggtgacctcgctgaccgccaccagggtgatcggctgcatccacttcaccacggagccg
cagtacctgaggtgccacttcatgcagtcgcagttcctcggcggcaccatcgtggtcatc
atcggggggattatcgtggcctcggtgctcgccttcatcatcttcctcatcgtgcgctac
agggtgtgtaaccatggagatgcagataaggctctagagatgggggacatttgctcgctg
agcagcgatgggcagctgcagggctgcgggatccccaagtccttctccaagcaggtcctg
cgtccagagaaaagtgagaaggagtgcctcaaaatgtccctgccgcccccggagccgacc
aagcagcgtccggcggcggcggcggccggcgccaaaccctccgtccccgactgcaccgtc
tcgacctcggccgccagccacagctggcacccggcctcgccgaacgccccgaggcccaaa
cgcttcagcgctccacccaaaccctccgaggctcaggcggacgtcgagctggataacgcg
aaccggaataactcgtcggaggtcaaaaccgttgccgggcggcccgccgagtggactgcg
gtccccaggggtccgcggccccgaccggggcctcaacattacatgaccgtgccagcgggc
ggagcgaggggggggaaccgcaggcactcgctcaacgcggactcgcacggcgagcgccgc
tgcgccgcggcccgcctcaaacccggggccggcctgcgctccaagaggagcctgtcgatg
agcggcgagctgccgcagccggagggcccgacgaacatgcggcgggccagagacaagctc
tccaagtccgagtggctcctggagagcactttatga
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