Pseudoliparis swirei (Mariana hadal snailfish): 130202586
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Entry
130202586 CDS
T09868
Symbol
hnrnpub
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein Ub
KO
K12888
heterogeneous nuclear ribonucleoprotein U
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130202586 (hnrnpub)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130202586 (hnrnpub)
Spliceosome [BR:
pswi03041
]
Common components
Common spliceosomal components
hnRNP proteins
130202586 (hnrnpub)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
CPT
AAA_22
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
130202586
NCBI-ProteinID:
XP_056284227
LinkDB
All DBs
Position
12:21644082..21653564
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AA seq
850 aa
AA seq
DB search
MSSINVKKLKVNELKDELKKRDLSDKGLKAELMDRLQAALDEEALAGNPPTEPDAAAAAE
GSGQAADQEGMGEEEEGEGPIEESMEANEEEEEEAEEVAAPVVVAEEVEEKTGNGGDGDA
VVEDEEMGEGEEEEDDEMDPMLKGDVDDMEKIDTEEDGEPADPTAEGDADKDTNADQKNK
KGVKRRREEHGRGYFEFIEENKYSWASFKSPVPPLEEEDEEFDDTKVSLDTYNCDLHFKV
SRDRYSASSLTMESFAYLWSGGKGTYGVNKGKACFEMKIAEKIPVKHISSKNMEIHDVQV
GWSLSTGTLLLGEEEHSYAYSGKGKKTTNCVTEDFGETYEENDVICCLIDFEGEELAVSF
SKNGGEPAAAFQVTKDSLNSQALFPHVICHNCAVEFNFGQMETPYFPQTEGYTFLQQIPV
DDRVRGLKGPQTKADCEIIVMVGLPGSGKTTWVKNHVQENPGKYYILGSDTIVDKMMINS
LKRQSKDITKLSAISQRAPLFLGKFIEIAARKKRNYILDHTNLSAPGQKRKMCLFAGFQR
KAVVVCPSDEDYKQRVQKKVEGDSKEVPEHAVFKMKGFYSLPEEGESFSDVIYAELQKEE
AGKLLEQYKEESKTALPAEKKPNQGSTTPKRGGGLRGGGRGGKNQFGRGGGGGSGPGQRG
GGRGGFQNRGNFRGAPGPRGGGGFNRPPRGFLPPPAFRGGFHSRGNFNRGGGPLPSLGGS
LRGGPMRGNMGPRGGHMNRGGPMNRGNMSRGGGGGGGGGGGGGGGVNMHRGGSRGHHNQF
QQQRGGNRGNFGNFGNKNGNYGNRNSGNGGNGGNFGNRNGMDKAQAFNQSWQQGFWNQKP
WSQQYQPGYY
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaatcaacgtgaaaaagctgaaagtgaacgagctgaaggacgagctgaagaag
cgagatctgtcggataaagggctgaaggccgagctgatggaccgcctgcaggccgcgctg
gacgaggaggccctcgcgggaaaccccccgacggagcctgacgctgcagcggcggccgag
ggctccggccaggccgccgaccaggagggcatgggagaggaagaagaaggcgagggcccg
atagaagaaagcatggaggccaacgaagaggaggaagaagaagccgaagaagtagcagcg
ccggtcgtagtagctgaagaagtagaagagaaaacgggaaatgggggcgacggggatgcc
gttgttgaagacgaagagatgggtgagggcgaagaggaggaggacgacgagatggacccc
atgctcaagggagatgtcgacgacatggagaaaatagacacggaggaggatggtgagccc
gcggacccgactgctgagggggatgcggacaaagacacgaatgctgatcagaagaataag
aagggtgttaagagacgccgggaggaacatggaaggggctactttgaatttattgaagag
aacaaatacagctgggcctcatttaagtcgcccgtgccccccctggaggaggaagatgaa
gagtttgacgacacaaaagtctccctggacacctacaactgcgacctgcactttaaggtg
tctcgggaccgttatagtgcctcgtctctcacgatggagagctttgcatacctgtggtcc
ggaggcaagggaacctacggcgtgaacaaaggcaaagcctgcttcgagatgaagattgca
gagaagattcctgtgaagcacatttctagcaagaacatggagattcatgacgtgcaggtc
ggctggtccctgtccaccggcaccctgctcctcggtgaggaggaacattcctatgcatac
tctgggaaaggcaagaagaccaccaactgtgtgaccgaggactttggagagacctacgaa
gagaatgatgtcatctgctgtcttattgactttgagggcgaggagctggccgtgtccttc
tccaagaacggcggggagcccgccgccgccttccaggtcacgaaggactccctgaacagc
caggccctcttcccccacgtcatctgccacaactgtgccgtggagttcaactttggccag
atggagactccgtacttccctcagaccgagggctacaccttcctgcagcagatccccgtg
gacgaccgagtccggggcctcaaggggccgcagaccaaggccgactgcgagatcatcgtg
atggtcggcctgccgggctcagggaagacgacatgggtgaagaatcatgtccaggagaac
cccgggaagtactacatcctcggcagtgacaccattgtggacaagatgatgattaacagc
ctgaagcgccagtcaaaagacatcacaaaactgagcgccatttcccagagagcacctctt
ttcctgggaaagttcattgagatcgccgcccgcaagaagaggaactacatcctggatcat
accaacctgtcggccccgggccagaagaggaagatgtgcctgtttgcgggcttccagcgc
aaggcggtggtggtctgcccctcggacgaggactacaagcagagggtccagaagaaggtg
gagggcgacagcaaagaggtgcccgagcacgccgtcttcaagatgaaaggcttctactcg
ctgcccgaggagggcgagagcttcagcgacgtcatctacgccgagctgcagaaggaggag
gccggcaagctgctggagcagtacaaggaggagagcaagacggcgctgccggcggagaag
aagcccaaccagggcagcaccaccccgaagagaggcggaggcctgcgcggcggcggccgg
ggcggcaagaaccagttcggccgcggcggcggaggcggcagtggacccggacagagaggg
gggggccgcgggggcttccagaaccgaggcaacttcagaggagccccgggtcctcgcggc
ggcggcggcttcaaccgtccccctcgcggcttcctgccccccccggcgttcaggggcggc
ttccacagccgggggaacttcaaccggggcggcggccccctcccgagcctgggcgggtcc
ctcaggggcggcccgatgaggggcaacatggggcccagagggggtcacatgaacagaggc
ggccccatgaacagaggcaacatgagcagaggaggaggaggcggaggaggaggaggtggt
ggaggaggaggaggagtcaacatgcatcgcggtggatccaggggacatcacaaccagttc
cagcagcagagaggtggtaaccgtggcaacttcggaaacttcggaaacaagaatggcaac
tatggcaacaggaacagcggcaacggaggaaacggcggtaactttggcaacaggaacggg
atggacaaagcccaggccttcaaccagagctggcagcaagggttctggaaccagaagccg
tggagccagcagtaccagcctggatattactaa
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