Pseudoliparis swirei (Mariana hadal snailfish): 130202593
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Entry
130202593 CDS
T09868
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130202593 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130202593 (cdc40)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
Step II factors
130202593 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
ANAPC4_WD40
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
130202593
NCBI-ProteinID:
XP_056284236
LinkDB
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Position
12:9491416..9511902
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AA seq
581 aa
AA seq
DB search
MSAIVDCLVSYGSDSDSENESTSKTDVDIVDPMDPDATAHLKPLDTDPTMTVAVLNSAPE
VAVKEAVETGTHLDPSLKEVTFNPTFETLFAPEFGPTNPFKSQQMAAPRNMLSGYAEPAH
LNDFMFEQQRRTFHTYGYALDPSVSTHQVSSIGYIGAVDEAEKNKGLTVFETGQKKAEKR
KKIKGGDAGDMDNFLGPWAKYIDEKDSAKPSEEEQKELDEIIAKRQKKGKNEEEAPAEEK
TVLHVKDMYDYQGRSYLHIPQDVGINLRSVDGPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYGERRCVRTFIGHSKAVRDICFNNSGTKFLSAAYDRYLKL
WDSETGQCISRFTNRKIPYCVKFNPDQEKQNLFVAGMSDKKIVQWDIRSGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYQRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccatcgtggattgcctcgtttcttacggtagcgactcggattcggaaaacgag
tcaacctctaaaaccgatgttgatatcgtggacccgatggatccggacgccacggctcac
cttaaacctctggataccgatcctacgatgacggtggctgttcttaattctgccccggag
gtcgccgttaaggaggctgttgagactggcacacacctggacccttcattgaaagaagtc
actttcaatcccacatttgaaaccttgtttgcaccagagtttggtccaacaaatccattt
aaaagccagcagatggctgcccccagaaacatgttatctggttatgcagaacctgctcac
ctcaacgactttatgtttgaacagcaaaggaggaccttccacacttatggttatgcttta
gatccatctgttagcacacaccaggtatcctctattggctacattggcgcagtggatgag
gctgagaaaaataaaggtctaactgtgtttgagaccggacagaagaaggctgagaaaaga
aaaaagatcaaagggggagatgcaggagatatggacaacttccttggaccatgggcaaaa
tatatagatgagaaagattctgccaaaccttcagaggaagagcagaaggagctggatgag
atcatagccaaacggcagaagaaggggaagaacgaggaagaggctcccgcagaagagaaa
accgttctccatgttaaagacatgtatgattaccagggcaggtcctaccttcacatccca
caggatgtgggtatcaacctgcgctctgtagatggtccagacaagtgttacttgcctaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgccatcagactatttcct
agctctggtcatcttctgctctcctcctccatggactgtaaaatcaagctgtgggaggtg
tacggtgagaggaggtgtgtacggacattcattggtcacagcaaagcagtgcgagacatt
tgcttcaacaacagtgggacgaagttcctcagcgctgcctatgaccgctacctgaaactc
tgggacagtgaaacaggccagtgtatctcccgcttcaccaacaggaagataccgtactgc
gtcaagttcaaccccgaccaggaaaaacagaacctcttcgtggccggcatgtccgataag
aagattgttcagtgggacatccggtcaggtgaggtcgttcaggagtacgaccgtcacctg
ggagccgtcaacaccatcacgtttgttgatgagaaccgtcgctttgtgagcacatcggac
gacaagagtctccgagtttgggagtgggacatccctgtggacttcaagtacatcgctgag
cccagtatgcactcaatgccagctgtgacgctgtctcccaacggtaaatggctggcgtgc
cagtcgatggacaaccagatcctgatctttggagcccaaaaccgctttaggctgaacaag
aagaaagtcttcaaaggccacatggtggctggctacgcctgccaagtggacttctcccca
gacatgagctatgtggtgtcaggggatgcagatggaaagctgaacatttgggattggaag
accaccaagctctaccaaaggatcaaggctcacgacaaagtgtgcatcagcgcactctgg
catccgcacgaaacctccaaggtcatcacctgcggttgggatggacaaatcaaactctgg
gactag
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