Pseudoliparis swirei (Mariana hadal snailfish): 130202616
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Entry
130202616 CDS
T09868
Symbol
hmbox1b
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130202616 (hmbox1b)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
130202616 (hmbox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_37
HTH_31
HTH_24
DUF494
NOC3p
MCLC
Motif
Other DBs
NCBI-GeneID:
130202616
NCBI-ProteinID:
XP_056284269
LinkDB
All DBs
Position
12:20594223..20609795
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AA seq
494 aa
AA seq
DB search
MSEFSEEPRFTIEQIDLLQRLRRSGMSKPEILHALDTLDRLDREHGDKFGRRTSSSSSSS
SCYGVGGANGCTNNSASNANNGNTASANAAAASSSSATCNGGEGVAVDQSAAAAVKSKIS
TATQTQFVGRGGLSPSHSYDTSPPPGPPPPAAVPPSPVSLVALSQNGRDSLAATPNGKLS
PPRYPVNGAAAARAFGFEATEEDLDIDDKVEELMRRDSSLVKEEIKAFLGNRRISQAVVA
QVTGISQSRISHWLLQHGSDLSEQKKRAFYRWYTLEKTTPGATLNMRLAPLPLEEMEWRQ
TPPPITTAPGTFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIANACNAVIQKPG
KKLSDLERVTSLKVYNWFANRRKEIKRRANIEATILESHGIDVQSPGGHSNSDDIDGNDF
SEQACDLPYFDKRPLGRPFGLYRLEPTSPTQDDSEHQDPISLAVEMAAVNHTILALSRTG
GIPNDIKTESLEDE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagttcagcgaggagccgcgcttcaccatcgagcagatagatctgctgcagcgg
ctgcgtcgcagcggcatgagcaagccggagatcctccacgcgctcgacactctggaccgg
ctggaccgggagcacggcgacaagtttggccgccgcacctcttcctcctcctcttcctcg
tcctgctacggcgtgggcggggcaaacggctgcaccaacaactctgcctcgaacgccaac
aatggcaacactgcctcagcaaacgccgccgccgcctcttcctcctccgcgacgtgcaat
ggaggcgagggcgtcgccgtcgaccaatcggcggcggccgccgtcaagtccaaaatctcc
accgccacacagacgcagttcgtcggcagaggcgggctctcgccgtcccacagctacgac
acgtccccgcctccgggtccgccgccgccggccgccgtcccgccctcgccggtgtcgctg
gtcgcgctgtcgcagaacggccgggacagcctggccgccacgcccaacgggaagctgtct
ccgcccaggtacccggtgaacggcgcggcggcggcgcgagcgtttgggttcgaggccacg
gaggaggacctggacatcgacgacaaggtggaggagctgatgaggagggacagcagcttg
gtgaaggaggagatcaaggcgttcctgggcaacaggaggatctctcaggccgtggtggca
caagttactggcatcagccagagccggatctcccattggctgctgcagcacggctccgac
ctgagcgagcagaagaagagggccttctaccgctggtacacgctggagaagaccacgcca
ggtgccacgctgaacatgcggctggccccgttgcccctggaggaaatggagtggaggcaa
accccgccccccatcactaccgcccccgggaccttccggctgcgtcgcggaagtcgcttc
acgtggagaaaagagtgcctggcagtgatggagagctacttcaacgacaaccagtatcca
gatgaggccaagcgggaggagatagcaaacgcctgcaacgctgttattcagaagccaggg
aagaagctgtccgatctggagagggtaacctccctgaaagtttacaactggttcgccaac
cgtcgcaaagaaatcaagagacgtgccaacattgaagccacaatcctggagagtcatggg
atagacgtccagagcccggggggacactccaacagcgacgacatcgatgggaacgacttc
tccgagcaggcatgtgacctgccctattttgacaagagacctctcggccgaccttttggc
ctttaccgactcgagcccacctcgccaacacaggatgacagcgagcaccaggaccccatc
tctctggcggtggagatggccgccgtcaaccacaccatcctggccctgtcccgaaccgga
gggatccccaacgacatcaagaccgagtccctggaggacgaatga
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