Pseudoliparis swirei (Mariana hadal snailfish): 130202801
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Entry
130202801 CDS
T09868
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130202801 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130202801 (sf3b1)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130202801 (sf3b1)
Spliceosome [BR:
pswi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130202801 (sf3b1)
Complex B
130202801 (sf3b1)
Complex C
U2 SnRNP specific factors
130202801 (sf3b1)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130202801 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
130202801
NCBI-ProteinID:
XP_056284545
LinkDB
All DBs
Position
2:21634560..21649247
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AA seq
1320 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLAEGEQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEDDEEEDSSTSLLGQKKPGYHAPVAILNAIPQPDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRLQMVEKAKAG
ELKVVNGSAASQAAAAAKRKRRWDQTADQTPTNTTPKKMSSWDQADSSAETPGHTPGHTP
AHTPSNSRWDETPGRSKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGS
TGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPAS
QMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDEL
DAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPLGGMTGFHMQVEDRTTKQMNDQPSGNL
PFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAR
EFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLID
EDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSL
LPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTI
SALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANY
YTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMA
LDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADI
DHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKS
AKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI
GMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLE
LLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS
PFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH
RQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPC
RMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVFNDDKNMYVRYELDYAL
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatatcgaggcccagatcctggagatccagggg
atgaaggcgaccctgctggcggaaggagagcagggagtgggcctcgactccaccggattt
tttgaccaggagatctacggcggcagcgacagccgctttgctggatatgtcacttccatt
gctgccaatgagcaggaagatgatgaggaagaggattcatccaccagcttgttgggacaa
aagaagcccgggtaccatgccccggtggcgatactcaacgccattcctcagccagacgag
caatacgacccatttgcagagcatcgtccgcagaagattgcagagcgggaagatgaatac
aaagcccggcgcagacagatgatcatctccccggagcgcctcgacccttttgcagatggg
ggcaaaacgccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcaa
aacctgtccaaagaggagagggagatccgtctgcagatggtagagaaggccaaagccggg
gagctgaaggtcgtcaacgggtccgctgcctctcaggccgccgccgccgccaaacgcaaa
cgtcgctgggaccagaccgctgaccaaacccccacgaataccacacccaaaaagatgtcc
agctgggaccaagctgactcgtctgctgagactccaggacacaccccgggacacaccccc
gcacacacgccctcaaacagccgatgggacgaaacccccgggcgctccaagggcagcgag
accccaggggccactcccagtacccgcatgtgggatcccactcccagtcacacacccgcc
ggcgccgccacccccggcagggacacgcccggccacgccacgcccggccacggcggttcc
acgggaagcgtacgcaagaaccgctgggacgaaaccccaaagacggagagggagaccccg
ggacacggcagcggctgggccgaaacgccacgcacggacaggggagacgagtcggtgggc
gagacgccgaccccgggggccagtaagaggaagtctcggtgggacgaaacccccgccagt
cagatgggatcctctacaccactgctgaccccagggaaaactcccattggcacgccagcg
atgaacatggctaccccaacacccgggcacctgatgagcatgactccagagcagctgcag
gcgtggcggtgggagcgcgagatcgacgagcggaaccggcctctcacggacgatgagctc
gatgccatgttcccagagggatacaaggttttgccgccgccagcgggctacgtgccgatc
cgcaccccggcccgtaagttgtccgccacgccgacccccctcggaggcatgacgggcttc
cacatgcaggtggaggaccgcaccaccaaacagatgaacgaccagccctcaggaaacctg
cccttcctcaagcccgatgacatccagtatttcgacaaactgctggtagaggtggatgag
tccacgctgagccccgaggagcaaaaagagaggaagatcatgaagctgctgctgaagatc
aaaaatggaacaccgcccatgagaaaggccgctctgcgtcagatcacggataaagctcgt
gagttcggcgccggcccgctgttcaaccagatcctgccgctgctcatgtcgcccaccctg
gaggaccaggagcgccacttgctggtgaaagtcatcgaccgcatcctctacaagctggac
gacttggttcgaccatacgtacacaagatcctggtggtgattgagccgctgctgattgat
gaggactactacgcccgagtagaaggcagagaaatcatctccaacttggcaaaggccgcc
ggtttggccaccatgatctccaccatgaggcccgatatcgacaacatggacgagtacgtc
aggaacaccacggcccgggcgttcgccgtggtggcctccgccctcggcattccctccctc
ctcccgtttctcaaagccgtgtgcaaaagcaagaagtcctggcaggcccggcacacgggc
atcaagatcgtgcagcagatcgccatcctcatgggctgcgccattctgccccacctccgc
agcttggtggagatcatcgaacacggtctggtggacgagcagcagaaggtgaggaccatc
agcgccctggccatcgccgccctcgccgaagccgccacgccgtacggtatcgagtccttc
gactcggtgctcaagcccctctggaagggcatccggcagcacagaggaaagggtctggcc
gccttcctcaaagccatcggttacctgatcccgctgatggacgccgagtacgccaactac
tacacccgggaggtgatgctgatcctcatcagagagttccagtcccccgacgaggagatg
aagaagattgtcctcaaggtggtgaagcagtgctgcggcaccgacggtgtggaagccaac
tacatcaagactgagatcctgccgcccttcttcaagcacttctggcagcaccggatggcc
ctggacagacgcaactacagacagttggtggacaccacggtggagttggccaacaaagtg
ggcgcggcggagatcatctctcgcatcgtggacgacctgaaggacgaggcggagcagtac
aggaagatggtgatggagaccatcgagaagatcatgggcaacctgggcgccgccgacatc
gaccacaagctggaggagcagctgatcgacggcatcctgtacgccttccaggagcagacg
accgaggactccgtgatgctgaacggtttcggcacggtggtgaacgccctcgggaagcgc
gtgaagccctacctgcctcagatctgcggcacggtgctctggcgtctcaacaacaagtcc
gccaaagtccgtcagcaggccgccgacctcatctcccgcaccgccgtggtgatgaagact
tgccaggaggagaagctgatgggtcacctgggggtggtgctgtacgagtacctgggagaa
gagtacccggaggtcctgggcagcatcctgggagccctgaaggccatcgtcaacgtgatc
ggtatgcacaagatgaccccgcccatcaaagacctgctccctcgtctgactcccatcctg
aagaacaggcacgagaaggtgcaggagaactgcatcgacctggtgggccgcatcgccgac
aggggtgctgaatacgtgtcggccagggagtggatgaggatctgcttcgagctgctggag
ctgctgaaggctcacaagaaagccatccgcagagccaccgtcaacacgttcggctacatc
gccaaagccatcggcccccacgacgtgttggccacgctgctcaacaacctgaaggtccag
gagcgccagaaccgcgtctgcaccacggtggccatcgccatcgtggccgagacctgctcg
ccgttcacggtgctgccggcgctcatgaacgagtaccgcgtgccggagctcaacgtgcag
aacggcgtgctcaagtcgctctccttcctgttcgagtacatcggcgagatgggcaaggac
tacatctacgccgtcacgccgctgctggaggacgcgctcatggaccgagacctggtccac
cggcagacggcgagcgccgtggtgcagcacatgtctctgggcgtctacggcttcggctgc
gaggactcgctgaaccacctgctgaactacgtgtggcccaacgtgttcgagacgtcgccg
cacgtcatccaggccgtcatgggcgccctggagggcctgagggtcgccatcgggccctgc
aggatgctgcagtactgcttacagggtctgttccacccggccaggaaggtgcgtgacgtc
tactggaagatctacaactcgatctacatcggctctcaggacgcgctgatcgctcactac
ccgcaggtgttcaacgacgacaagaacatgtacgtccgctacgagctggactacgccctg
taa
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