Pseudoliparis swirei (Mariana hadal snailfish): 130202883
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Entry
130202883 CDS
T09868
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130202883 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130202883 (cpsf2)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130202883 (cpsf2)
U7-dependent histone pre-mRNA processing factors
130202883 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
ODP
Motif
Other DBs
NCBI-GeneID:
130202883
NCBI-ProteinID:
XP_056284684
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Position
12:complement(13223587..13230640)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRILLDCGWDENFSMDIIESMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYNQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCILESISRPSLLITDSFNAKYVQPRRKQRDELLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEEFLEKDKVKKEAAKKLEQAKEVDVDSS
DESDIDDDLDQPAVVKTKHHDLMMKSEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEDFLVPELQATEDEKSKMESGMTNGDEPMDQDLSVVPTKCISSIENLEIRARIMYID
YEGRSDGDSIKKIINQMKPRQLVIVRGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKEETEEGE
LAMDVAPDLDIDQNATAVAAQRAIKNLFGEDEKEVSEESDVIPTLEPLPPHEIPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacttccattatcaaactgacagccgtatcaggggttcaggaggaatcggccctctgt
tacttgctgcaggtggatgaattccgcatcctcctggactgtggctgggatgagaacttc
tcgatggacatcattgaatctatgaaacgatatgttcatcaggtcgatgccgtgctcctc
tcccaccctgaccctatacacctgggagccctgccatatgcagtggggaagctgggtcta
aactgcactatctatgcgacaattcctgtctacaagatgggtcaaatgttcatgtatgat
ctatatcagtctcgaaataacagtgaagatttcacactgttcaccctcgatgatgtggac
tgtgcttttgataaaatccagcagctgaaatacaatcagattgtcaatttgaaaggcaaa
gggcatggtctttccatcactccacttccggccggtcacatgattggaggtacgatttgg
aaaattgtgaaggatggcgaggaggagattatttatgctgttgacttcaaccacaagaga
gaaatacacctcaacggctgcattttggagagcattagtcgtccatctttgcttatcaca
gactccttcaatgctaaatatgtacagccacgtcgcaaacagagagatgagctgctcctt
accaatgtaatggagacccttcgtggtgacggcaatgtccttattgccgtggacacagca
gggcgcgtgttggagctggctcagctcttggaccagatttggaggacaaaagacgctggg
ctgggagcttacccactcgctctgctgaacaatgtcagctataatgtggttgagttctca
aagtcccaggtggagtggatgagtgacaagctcatgaggtgctttgaagacaagagaaac
aaccccttccagttccgccacttgaccctgtgccacagtctggcagacctagcgcgggtg
cccagtcccaaggtggtgctttgtagccaaccagacctcgagtctggcttttccagagaa
ctcttcatccagtggtgccaagacgccaaaaactcggttatcctgacctaccgcactaca
cctggaactctggcccgctacctcattgacaatcctggagagaagatgttggatctggag
gtgaggaaaagagtgaagcttgaaggcaaggagctggaagaattccttgaaaaggataaa
gttaaaaaagaagccgctaaaaaactggaacaagcaaaagaggtggatgttgactcaagt
gacgagagtgatatagacgatgatctggatcagccagctgtagttaaaactaaacatcac
gacctgatgatgaagagcgagggtagccgcaaaggcagcttcttcaaacaagccaaaaag
tcttatccaatgttccccacgcatgaggagagaatcaaatgggacgagtatggggaaatc
atcaggctggaagacttcctggttcctgaactgcaagccacagaggatgagaaaagcaaa
atggaatccgggatgaccaacggggatgagccgatggaccaggatctctcggttgttccc
accaaatgcatctccagtatagaaaatcttgaaattagagcgaggataatgtacatagac
tacgaaggtcgctctgatggcgactccatcaagaagattattaatcagatgaagcccaga
cagctggtgatcgttcgtgggccgccggaagccagtctggacctggctgagtcctgcaag
gctttcagcaaggacatcaaggtctacacacccaaactgcaggagaccatagacgccacc
agtgaaacgcacatctaccaggtgcggttgaaagactccttggtgagctccctgcagttc
tgcaaggccaaagacacggagcttgcctggatcgatggcgtgctggacatgcgcgtggtg
aaggtggacacgggcgtgatgctggaggagggtgtgaaagaggagacggaggaaggcgag
ctggccatggatgtcgcccctgatctcgacatcgaccaaaacgccacggcggtggcggca
cagcgagccattaagaacctgtttggggaggacgagaaggaggtgtctgaagagagtgat
gtcattcccacgctggagccactgcctccacatgagattcctggacatcagtcggtgttc
atcaacgagcctcgcctgtccgacttcaagcaggtcctgctgagagagggcatccaggcc
gagtttgtaggaggagtgctggtatgcaacaacatggtggctgtccgcaggacggaggcc
gggcgcatcggcctggaaggctgcctgtgtgatgactactataagatccgggagctgctg
tatcagcagtacgccgtggtatag
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