Pseudoliparis swirei (Mariana hadal snailfish): 130202932
Help
Entry
130202932 CDS
T09868
Symbol
ptchd4
Name
(RefSeq) patched domain-containing protein 1 isoform X1
KO
K24682
patched domain-containing protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130202932 (ptchd4)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Other domain-containing proteins
Patched domain-containing proteins
130202932 (ptchd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
ORF45
DUF7041
Motif
Other DBs
NCBI-GeneID:
130202932
NCBI-ProteinID:
XP_056284802
LinkDB
All DBs
Position
12:176735..235258
Genome browser
AA seq
919 aa
AA seq
DB search
MCFIGGDRASASGILWRMLRQVIHRGLKASFYWLGLFVSRHPVFFITVPAVLTIIFGSTV
LSRFTPETDLEVLVAPTHSLAKIERSLANSLFPIDQSKHKLYSDLHTPGRYGRLILLARS
GGNILELAEQVLRVHKQVLELHVNYKGFNYTFAHLCMLRHRDKRCLLDDIVTIFEDIGHA
VLSNSTFHKVPVSYPNTTLKDGRVSFIGHQLGGVSFSANSRDQQVKYARAVQITYYLRNH
GPVVQDAIAERWENEFCALVNRLSTAEAPHATDQLHVQSLTSFSLWRDFHQTGVLAKGEV
LVSLVLVLLAATISSSMRDCLRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLLGI
PFFAMGHGTKGVFELLAGWRRTRENLPFKERVADAFADVMVCYTMTSSLYIITFGMGASP
FTNIESVKIFCQSMCVAILVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDR
QPTWFKTMMSDGHDLATHHDSVPYQNHFIQQFLHEHYTEWITNTYVKPFVVILYLIYASF
SFMGCLQISDGSNIVNLLASNSPSVSYAVTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEH
LKTLSHGFNKISWMDNFFHYLRVVNVNASTKGDFITILKGSFLRSPEYQHFTEDIIFSKN
RETDEYDIIASRIYLVARTTEKKREEVVELLEKLRPLMLINNIKFIAYNPTFVFMDRYSS
SVISPILTSGFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVGMDSISI
LCLIYTLNFTMDHCVPHLYTFVLATEHTRTQCIKLALEEHGAAILQNAFCFVIGIMPLVF
VPSNLTYTLFKSSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKERERERERE
REEIECIEVRENPDHVTNV
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcatcggaggagaccgggcatctgcgagcgggattctgtggaggatgctgcgg
caagtgatccacagagggctcaaggcttcgttctactggctgggcttattcgttagcagg
caccccgtgttcttcatcaccgtcccagcggtcctcaccatcatcttcggctccacggtg
ctcagccgattcacgccggagacggacctggaggtgctggtggcgccgacccacagcctc
gccaagatcgagcgcagcctcgccaacagcctgttccccatcgaccagtcgaagcacaag
ctgtactcggacctgcacacgccgggcagatacggcaggctcatcctgcttgcccggtcc
ggcgggaacatcctggagctcgccgagcaggtcctgcgggtccacaagcaggtgctggaa
ctgcacgtcaattacaaggggtttaactacacgttcgcgcacctctgcatgctcaggcac
cgggacaagcgctgcctgctggacgacatcgtcaccatcttcgaggacatcgggcacgcg
gtgctctccaacagcactttccataaggtgcccgtgagctacccgaacacgacgctgaag
gatggccgtgtgtccttcatcggccaccagctgggaggcgtgtccttctcggccaacagc
cgcgaccagcaggtcaagtacgcccgggccgtccagatcacctactacctccgcaaccac
ggacccgtggtgcaggatgccatcgccgagcgctgggagaacgagttctgcgcgctggtc
aaccggctgtcaacggccgaggcgccgcacgccaccgaccagctccacgtccagtcgctc
acctccttcagcctgtggcgggacttccaccaaacgggcgtgctggccaagggggaggtg
ctggtcagcctggtgctggtgctcctggccgccaccatctccagctccatgcgggattgc
ctgagggggaagccgttcctgggcctgctgggcgtgctgaccatatgcatcgccaacgtg
acggccgcggggatcttctttatatcggacgggaagttcaactccacactcctggggatc
ccattctttgccatgggccatggaaccaaaggggtgtttgagctgctggcaggttggagg
agaacgagggaaaacctccccttcaaggagcgcgtggcggacgcttttgctgatgtgatg
gtgtgctataccatgaccagctccctctacatcatcaccttcggcatgggagctagccct
ttcaccaacatcgagtcggtgaaaatcttctgccagagcatgtgcgttgccatcctggtc
aactacttctacgttttctctttctacggctcctgcctggtgtttgccggacagctggag
cagaaccgctaccacagtgttttctgttgtaaaatcccctcggtggagtacctggaccgc
cagcccacatggttcaaaaccatgatgagtgatggccatgacttggccacgcaccacgac
agcgtcccctaccagaatcacttcatccagcaattcctgcatgagcactacacagaatgg
attaccaacacctatgtgaaaccctttgtggtcattctgtatctcatctacgcctctttc
tcattcatgggatgtttacagatcagtgatggatcaaatatagtgaacctgctggctagt
aactccccgagtgtgtcttacgctgtgacgcagcagaagtacttcagcaactacagtccc
gtgattgggttctacatttacgagcccatcgagtactggaactccacggtgcaggagcat
ctgaagaccctgagtcatggcttcaacaagatctcttggatggacaactttttccactac
ctgcgtgtggtgaacgtgaacgcatcaaccaagggcgatttcatcactatcctcaagggc
tccttccttcgcagcccggagtaccagcacttcaccgaggacatcatattctccaagaac
cgcgagactgacgagtacgacatcatcgcctcgcggatatacctggtggcacgaacgacg
gagaaaaaacgcgaggaggtggtggagcttctagaaaagcttcgtcccttaatgctgatc
aacaacatcaagttcatcgcctacaatcccacgtttgtgttcatggaccgctacagctcc
tctgtcatctcgcccatcctgacctcagggttcagtgtactcacaatcctcatcctcact
ttcttcctggtcatcaacccattggggaacttttggctcatcctcacggtgacctccgta
gagctcggcgtcttgggtttgatgaccctctggaacgttggcatggacagcatctcaatc
ctgtgccttatttataccctcaacttcaccatggatcactgtgtaccacacctgtacact
tttgtgctagccaccgagcacactcggacacagtgcattaagttggctctggaggagcac
ggggcggccatcctgcagaacgcattctgttttgtgatcgggatcatgcccctggtgttt
gtgccttccaatctgacctacacactgttcaagtcctccctcctcacggcgggctgcacc
gtgctgcactgctttgtcatcctgcctgtcttcctgaccttcttcccgccgtccaaaaag
agacacaagaaaaagaaacgggccaagcgcaaagagcgggagagggagcgtgagagggaa
agggaggagatagagtgcattgaagtcagggagaatcctgatcatgtgacaaacgtctga
DBGET
integrated database retrieval system
