Pseudoliparis swirei (Mariana hadal snailfish): 130202976
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Entry
130202976 CDS
T09868
Symbol
taf1b
Name
(RefSeq) LOW QUALITY PROTEIN: TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130202976 (taf1b)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
130202976 (taf1b)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
130202976
NCBI-ProteinID:
XP_056284849
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All DBs
Position
12:1024863..1039295
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AA seq
570 aa
AA seq
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MDEEQTAGYREPCAVCSAVDWGVSDEGRFYCRSCHNVIERTREVVDPTFTLGSARISTIG
RGTRTKRPERGRQWVVCEGFQFILRNQADALLSLGVSPRFKDQVLSHLWRIYLQKSRQAY
TSNPMRTARFRVRAPGSDSDSAAEASVLSASETDADTNASSAAGSTAGSSSDWSPCSGSL
DAAHYLTDRLRRSRHDLMSMKKTLALIHLALVWTEEPLTLSDLLRLVNEGHVPYLNAYEE
LPDEMRLEGKDALIFRVESIPPHRVVHRDARALILFLQLPAFPPISRQSLLHPSALSLRY
LMDANLPDELHPWVCRLMERAGLASPARLTFHRRVFPFLPRYDVQAAALVIVTMKLLFGL
DDHTEWDLSSEAGDQDASRDLFSLRRWFRVVQSRPSLCSRSRGETRIAEQVQLCFEKLSS
RPAGSERXGPSSFRFCWGGGASDGPSLHHQRLDGVLSLRDHAPSNASYWHPAVRASQMCS
RLFVEVEASLPRSFVWLLQLFCFLLDVKPAYLMEEVLRVETRFINKARRTRTKSKTKSKT
KSKTKSKTKSKSKTRTRTSAQRGRAAGETR
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaacaaacggctggctacagggagccctgtgctgtgtgttcggcggtggat
tggggagtttcagacgaaggtcgtttctactgcaggtcctgtcacaacgtcatcgagaga
accagagaggtggtggacccgaccttcaccctcggctccgccaggatctccaccatcggc
cggggaaccagaaccaagaggcccgagcgcggccgccagtgggtggtgtgtgagggcttc
cagttcatcctgaggaaccaggccgatgcgctgctgtctctgggagtcagcccccggttc
aaggaccaggtgctgagtcacctgtggagaatctacctgcagaagagccgccaggcctac
accagcaaccccatgaggacggcccggttcagggtgcgagctccgggctctgactctgac
agcgccgccgaggcgtccgtcctctcggccagcgagacggacgcagacaccaatgcctcc
agcgccgccggctccaccgcagggagctcctctgattggtcgccgtgttcgggctctctg
gacgccgcccactacctgacggatcgcctgaggaggagccgacacgatctgatgagcatg
aagaagactctggccctgatccacctggccctggtctggaccgaggagccgctgacgctc
agcgacctgctcaggctggtgaatgaaggtcacgtcccgtacctgaacgcttacgaggag
cttcctgacgagatgaggctggaaggaaaagacgctctcatcttcagagtggagagcatc
cctccccaccgggtggtgcaccgcgatgctcgcgctctcatcctgttcctgcagcttcct
gcttttcctccaatcagccggcagagtctgttgcacccgtctgcgctcagcctgcgctac
ctgatggacgccaatctgcccgacgagctccacccgtgggtgtgcaggctgatggagcgc
gctggtctggcgtctccagcgcgcctcacctttcaccgccgcgtcttccccttcctgccg
cggtacgatgtgcaggccgccgccctcgtcatcgtcaccatgaagctgctcttcggcctg
gacgaccacaccgaatgggacctgtccagcgaggccggagaccaggacgcctccagagac
ctgttcagcctgaggaggtggttcagggtggtgcagtctcgcccgagtctctgcagtcgc
agcagaggagagaccaggatcgcggagcaggtgcagctctgctttgagaagctctcctcc
cggccggccggcagcgagcgcntcggcccgtccagcttcaggttctgctgggggggcgga
gcctccgacggacccagcctgcaccaccagaggctggacggggtcctgagcctgagagac
cacgccccctccaacgcctcctactggcacccagcggtcagagcctcccagatgtgctcc
cggctgttcgtggaggtggaggcgtcgctgccccggagcttcgtctggctgctccagctt
ttctgcttcctgctggacgtgaagccggcctacctgatggaggaggtgctgagggtggag
accagattcatcaacaaggccaggaggaccaggaccaagtccaagaccaagtccaagacc
aagtccaagaccaagtccaagaccaagtccaagtccaagaccaggaccaggaccagcgcc
cagagaggacgggcagctggagagacgagatga
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