Pseudoliparis swirei (Mariana hadal snailfish): 130203013
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Entry
130203013 CDS
T09868
Symbol
stxbp5a
Name
(RefSeq) syntaxin-binding protein 5a
KO
K08518
syntaxin-binding protein 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130203013 (stxbp5a)
Membrane trafficking [BR:
pswi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
130203013 (stxbp5a)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
130203013 (stxbp5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40_Prp19
Beta-prop_HPS5
EIF3I
Lgl_C
Beta-prop_NUP159_NUP214
CFAP43_N
Beta-prop_Vps41
Synaptobrevin
Beta-prop_WDR35_TULP_N
VPS8_N
Beta-prop_VPS8
WD40_like
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
130203013
NCBI-ProteinID:
XP_056284886
LinkDB
All DBs
Position
12:complement(9844439..9907227)
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AA seq
1045 aa
AA seq
DB search
MCPLYERWPPPTFVLSVVGRMNGYNQEPFRFGRPGVECYCQHESGAAVIQLQFLINEGAL
VSALADDSVHLWNLRQKRPAILHSLKFSKERITFCHLPFQSKWLYIGTERGNIHLVNVES
FMLSGYVIMWNKAIELSSKAHPGPVVHISDNPMDEGKLIIGYEAGIVVLWDLKSKKADCR
YIYDEAIHSVAWHHEGKQFICSHSDGTLTIWNIRGQGKPIQTITPHGKQPKDGKKPEPCK
PILKVEYKTTRLGEPFMILSGGLSYDTVGRRPCLTVMHGKSTAVLEMDYPIVDFLTLCET
PYANDFQEPYAVVVLLEKDLVVIDLAQNGYPIFENPYPLTIHESPVTCCEYFADCPGDLI
PALYSVGSRQKRQGYSKKEWPISGGNWGQGTQSYPEIIITGHADGTLKFWDASAIMLQVL
YKLKTAKVFDRNRSKEDKGSTEVSDEDPFAIQIMAWCPESRMLCVAEVSANVIIYRFSKL
EVTTEVVQLLEVRMQNELSDIESPDGGGGGGEQTSALPTPGVSPQTSGPPSHPSTSSNNS
DGGNMPCLKVRSTPLKQSAGYQVDLVVQLVWVSGEPPQQITSLAINSSYGLVVFGNSNGL
AVVDYVQKTVVLNLGTVELYGSNDPYQRQPRSPRKTRQPSGGLCDINEGSATSEDRCKSP
TSDHRDNSFSRSRSSSVTSIDKEAREAISSFHFIETFARKGDSTLTPCLYVATTLGTVLA
LALTLPPAGEQRQLQPVIISPTGMLVRLKGSIMRMAYLDSTGAMLSPPFEPWFEPNVTAD
GEEREKVRKRRPVSVSPSTSQDLNESQYAVVCSEKQAKVISLPSQTCIYKHSITETSFIL
RADVVQMSQGVCLACFCANGHIMTLSVPGLRPLMDVNYLPLTDMRIARTFCFTNLGQAMY
LCSPTEAQRLTYSQDTCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFG
ELSSGKASRSLAQHIPGPGGIEGMKGAASGVVGDLARARIALDERGQKLGELDEKTAAMM
ASADYFSKHAHEMMLKCKDKKWYQF
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtgccccctgtatgaaagatggccaccccccaccttcgtcctcagcgtcgtgggaaga
atgaatgggtataatcaagaacctttcaggtttggtcgtccaggcgtggagtgttactgt
cagcatgagagtggagcggccgtcatccagctccagtttctcatcaatgagggagcgctg
gtgagtgctctggctgacgacagtgttcacctgtggaacctgaggcagaagagaccagcc
atcctccactccctcaagttcagcaaagagagaataactttctgccacctgcccttccag
agtaaatggttgtacatcggcacagaacgagggaacatccacctcgtcaacgtggagtcc
tttatgctctcaggctacgtcatcatgtggaacaaagccattgaactgtcctccaaggct
caccctggaccagttgtgcacataagtgacaaccccatggatgaggggaagcttataatt
ggatatgaggctgggatcgtggtcctatgggatctgaaatcaaagaaggccgactgtcgc
tacatttacgatgaggcgatccactcagttgcctggcatcacgagggaaagcagttcatt
tgcagtcactcagatggaactctgaccatatggaacatcagaggccagggcaagcccata
cagacaatcaccccacacggaaaacagcccaaggacgggaagaagccagaaccttgtaaa
cccattctcaaagtggagtacaaaaccacgagacttggggagcccttcatgatcctgtcc
ggcggtctgtcctacgacacggtaggacggcgtccatgtctgactgtaatgcacgggaag
agtaccgctgtgctggagatggactatccaatagtggacttcctcacactgtgtgagaca
ccatacgctaacgattttcaggaaccttacgctgtggtggtccttctggaaaaggattta
gtggtgatcgaccttgcacaaaatggttatcccatattcgagaacccctatcctctgact
atccacgagtctcctgtgacctgctgcgagtactttgccgactgccctggggacctcata
cctgcactttactccgtcggctctcggcagaaacgacagggctacagcaaaaaggaatgg
cctattagtggtggaaactggggtcaaggcacacagagctacccagagatcatcatcact
gggcatgctgatggaactctgaagttctgggatgcctctgcaataatgctccaggtgctt
tataagctcaaaacagccaaggtgtttgacagaaaccggtccaaggaggacaagggcagc
accgaggtgtcggatgaagacccctttgccattcagatcatggcctggtgccctgaaagc
cgaatgttgtgtgtggccgaggtgtcggccaacgttatcatctaccgcttcagcaaactg
gaagtaactaccgaggtggtgcagctactagaggtgcgaatgcagaacgagctgagcgac
atcgagtctccagacggcgggggtggcggaggagaacagacatcggcgcttcccaccccc
ggtgtgtcccctcagacgagcggcccaccttcacacccctccaccagcagcaacaactct
gatggaggcaacatgccctgcctcaaagtgcgcagtacccctttgaagcagtctgcaggt
taccaggtagatttggtggtccagttagtgtgggtgagcggagagcctccgcagcagatc
accagtctggcgatcaattcctcctacggccttgtggtgtttggcaacagtaacggtctg
gcagtggtggactacgtccagaagacggtggtgctcaacctggggacggtggagctctac
ggctccaatgacccctaccagagacagccccgctcgccaaggaagacacgacagccctct
ggaggtctgtgcgacattaacgaaggctcagccacatcagaggaccgctgcaaatcccct
acttcagaccaccgggacaattctttcagccgctcacgctcctccagcgtcaccagtatc
gacaaggaagcgcgagaggccatcagctccttccacttcattgagacctttgcccggaag
ggggatagcactttgacaccctgcctgtacgtggccaccactctgggcacggtgctcgct
ctagcgctcacactgccccctgctggggagcaacggcaactgcagccagttatcatttca
ccgacaggcatgctggtgcgtctgaagggcagcatcatgcggatggcttacctggattct
acaggtgccatgctgtcccctccctttgagccttggtttgagcccaacgttacagcagat
ggtgaagaaagagagaaggtccgtaagcgccggcccgtctcggtgtccccttccacctcc
caggacctcaacgagagccagtacgctgtggtgtgttcggagaaacaggccaaagtcatt
tccctcccctcccagacctgcatctataaacacagtatcacagagacctccttcatccta
cgggcagatgtggtgcagatgagccaaggcgtgtgtctggcgtgtttctgcgccaatggc
cacatcatgaccctcagtgtgccgggactgagaccgctcatggatgtaaactacctgcct
ttgacggacatgcggatagcaaggacgttctgcttcaccaacctgggtcaggccatgtac
ctctgctcccccacggaggcccagaggctcacttacagccaggacacctgtgaaaacctg
caggagatgctgggggagctttttacaccagtggagacaccagaggctcccaacagaggg
ttcttcaaaggcctctttgggggaggagcacagtcactggacagagaggagctatttggt
gagctttcatctggaaaggcatcccgaagtttggcccagcacatcccaggcccaggtggc
attgagggcatgaagggagcagcttctggtgtcgttggagatctggcacgtgcccgaata
gcactggatgaaagaggccagaaactgggcgagctcgatgagaagacggctgccatgatg
gccagcgcagactacttttccaaacacgctcatgagatgatgctgaagtgcaaagacaaa
aaatggtaccagttctga
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integrated database retrieval system
