Pseudoliparis swirei (Mariana hadal snailfish): 130203158
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Entry
130203158 CDS
T09868
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
130203158
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130203158
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
130203158
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
130203158
NCBI-ProteinID:
XP_056285042
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Position
13:complement(5313367..5394681)
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AA seq
1211 aa
AA seq
DB search
MSKRFNPDPSVHISKMSVIIPFSSDVPCDSNGQRMWWAFLASSMVTFFGGLFIILLWRTL
KYLWTVCCHWNAKKEVHRLTTGNGIKRINKNDLPASEVGWMTSVKDWAGVMISAQTLTGR
VLVVLVFALSIGALVIYFIDSSDPIESCQNFYEDFTLQIDMAFNVFFLLYFGLRFIAAND
KLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSI
KLVNLCSIFISTWLTAAGFIHLVENSGDPWENFKNSQSLSYWECVYLLMVTMSTVGYGDV
YAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKHIVVCGHITL
ESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLAR
VKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIP
SWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVA
NEMYTEYLSSAFVGMSFPVICELCYVKLKLLLIAIEYKSDQRECSTLINPGNHMKMQEGT
LGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKKSKNSYNGYIKSIAVEEDRQSA
LSPKKKQRNGGMKDSPNSSPKIMRHDPLLIPGNEQIESMDENVKKYDSTGMFHWCPSKDI
EKVILTRSEAAMTVLSGHVVVCIFGDVKSALIGLRNFVMPLRASNFHFHELKHIVFVGSL
EYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKEC
ILASLNIKSMLFDDSIGVLQANSQGFTPPGMDRSSPENSPVHGLVRQTSVTTGANIPIIT
ELAPLAKTGKKLPVISFSQDKSSGTGIQIITELVNDSNVQFLDQDDDDDPDTELYLTQPF
ACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEGLLAEENALRGGYSTPQTL
ANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSSQSQCT
KRYVITNPPYAFELVPSDLIFCLMQFDHNAGQSRTSLSHSSHSSHSSSKKGSSVHSIPTT
NRTNRVRNRDKQNATRMNRVGQEKRFTDESENIHLRTTQIKPVNTLTINQVSHYKSSSSL
TPPIKEVEDEC
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagattcaacccggatccttccgtccacatatccaagatgagtgtcatcatc
ccgttttcctcagatgtgccatgtgacagcaacggccagcgcatgtggtgggctttcctc
gcctcctccatggtcactttctttgggggtctcttcatcatcctcctgtggagaactctt
aaatatctgtggactgtgtgctgccactggaacgccaagaaggaggtccatcggctcacc
acaggcaatggcatcaagcgcatcaacaagaacgacctgccggccagcgaggtgggctgg
atgacctcggtcaaagactgggccggagtcatgatctccgctcagacactgacgggaaga
gtcctggtggtgctcgtatttgctctcagcattggagcccttgttatatacttcatagat
tcttctgatccaatcgagtcctgtcagaacttctatgaagacttcacgttgcagatcgac
atggcgttcaacgtgttcttcttgctgtactttggcctccgtttcattgctgccaatgac
aagctgtggttctggttggaggtgaactcggtggtcgacttcttcacggttcctccagtg
tttgtgtccgtgtacctgaacaggagctggctcggcttgaggtttttaagggcgttaagg
ttgattcagttctcagaaattttacagtttttgaatatactaaagacaagcaactcaata
aagctggtgaacctatgttcaatcttcataagcacatggctaactgcagcaggattcatt
catttggtggagaattctggggatccttgggaaaacttcaaaaattcccagtcactttcc
tactgggaatgtgtctacttactcatggtcacgatgtccactgttggctacggagacgtt
tatgcaaaaaccaccctgggccgcctgtttatggtcttcttcatcctcggtggtttggcc
atgtttgcgagctacgtccctgaaatcatagagttaataggaaaccgcaagaaatatggt
ggttcctatagtgcggttaatgggagaaagcacatcgtggtctgtggtcatataacactt
gagagtgtgtccaactttctaaaagacttcctacacaaagacagggatgatgtcaatgta
gaaattgtttttctccataatatctcaccgaatcttgagctggaagccttgttcaagcgc
cacttcactcaagtggagttttaccaaggatccgtactgaacccacacgacctggccaga
gtgaagatcgaatcagctgatgcttgtttgatcttagccaacaaatactgcgctgaccct
gatgctgaggatgcgtccaacatcatgagagtaatatctatcaagaactaccatccgaag
atcagaattatcactcaaatgttgcagtaccacaataaggcccaccttctgaacatcccg
agctggaactggaaggagggagatgacgctatttgccttgcggagcttaagctgggcttc
atcgctcagagctgcctggctcagggcctctccaccatgctggccaaccttttttctatg
aggtccttcatcaagatcgaggaggacacatggcagaagtattacctcgaaggagtggcc
aatgagatgtataccgagtacctatcgagtgcctttgtgggcatgtccttcccggtcatt
tgcgaactctgctacgtgaagctaaagctgctcctgatcgctatagagtataagtcggat
caaagggaatgcagcaccctgataaaccctggaaaccacatgaagatgcaggaggggaca
ttgggcttcttcattgcaagtgatgccaaagaagtgaagagggcgctgttttactgtaaa
gcctgccacgatgacattactgatcccaaaaggattaagaaatgtggatgcaagaaatct
aaaaatagctataatggatatatcaaatcaattgcagttgaagaggaccgacagtctgcg
ttatcgcccaaaaaaaagcaacgcaacggaggcatgaaagattctccaaactcctcaccc
aagatcatgagacatgacccgctcctcatcccgggaaacgaacagattgagagcatggac
gagaacgtaaagaaatacgactccacggggatgtttcactggtgcccgtccaaagacatc
gagaaggtcatcttgacccggagcgaggccgccatgactgttctgagcggtcacgtggtc
gtgtgcatatttggagatgtgaaatctgcgttgatcggtcttcggaactttgtcatgcct
ctgcgagcgagcaactttcacttccatgagctgaagcacattgtgtttgtcggctcactc
gagtatctgaaacgggagtgggagacgcttcacaattttccaaaggtctccattttacct
ggcacaccgttgagtcgagcagatctgagggctgtcaacatcaacctctgcgacatgtgt
gtcattctgtcagccaatcagaacaatattgacgatgcatcacttcaggacaaagaatgc
atcttggcgtcactcaacatcaaatccatgctgtttgacgacagcatcggggtcttgcag
gctaattcccaaggcttcacaccaccaggaatggatcgatcctctcctgaaaacagcccc
gtgcatggattagtgaggcagacttctgtcacaactggagcaaatattcccatcataaca
gaactagcaccgttagcaaagacaggcaaaaaactgcctgtgatttcattcagtcaggat
aaaagcagtgggaccggcatacaaatcataactgagcttgtaaatgactccaatgttcag
ttcctggaccaagatgacgacgatgaccctgacacagagttgtacctcactcagccgttt
gcctgtggaacagccttcgccgtcagtgtgctggattccttaatgagtgctacatacttc
aatgataatatcctcaccttgatccggacgttggtaacaggcggggcgacgccggagctg
gaggggctgctggccgaggagaacgcgttgcggggcggctacagcacgccgcagacgctg
gccaacagggacaggtgtcgcgtggcacagctggccctgtacgacgggcccttcgccgac
ctcggggatggcggttgctatggtgacctgttttgtaaagccctgaaaacatacaacatg
ttgtgctttggcatctatcggttacgcgacgcacatctaagcagccaaagccaatgtacc
aagcggtatgtcataaccaatccaccgtatgcgtttgagctggtgccctcagacctgata
ttctgcctgatgcagtttgaccacaacgccggccagtctcgaaccagtctgtcgcactct
tcccattcgtcccattcctccagcaaaaagggctcttctgtccactccatcccaaccacc
aaccgcaccaaccgggtccgaaacagagacaaacaaaatgcaacaaggatgaatagagtg
ggccaagaaaagaggtttacagatgagtcagagaatatccacctgaggaccacacagatc
aagcctgtgaatacgctcaccatcaaccaagtcagtcattataaatcctcaagcagcttg
actccacccatcaaagaagtagaagacgagtgctga
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