Pseudoliparis swirei (Mariana hadal snailfish): 130203176
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Entry
130203176 CDS
T09868
Name
(RefSeq) thyroid hormone receptor alpha-like
KO
K05547
thyroid hormone receptor alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04080
Neuroactive ligand-receptor interaction
pswi04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130203176
04081 Hormone signaling
130203176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130203176
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pswi03310
]
130203176
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
130203176
Nuclear receptors [BR:
pswi03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
130203176
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
130203176
NCBI-ProteinID:
XP_056285075
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Position
13:complement(10302860..10333817)
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AA seq
428 aa
AA seq
DB search
MELASREQDRSPSEGEEKRWLNGPKRKRKNSQCSLKSMTARCLSDSSKSLELKEASKEGY
IPSYLEKDEPCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKI
TRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRRLIEENRERRKKEEMVKTLQNRPEPTD
SEWEVIHLVTEAHRHTNAQGAQWKQKRKFLPEKIGQSPVTPTSDGDKVDLKAFSEFTKII
TPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAMRYDPESETLTLSGEMAV
KREQLKNGGLGVVSDAIFDLGKSLAQFHLDDTEVALLQAVLLMSSDRSGLTSMDRIEKCQ
EIYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFL
EVFEDQEV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggaactcgcgtccagggagcaggaccgtagcccatcagagggagaggagaaacggtgg
ctcaatggcccgaaaaggaagaggaagaacagccaatgttccttgaagagtatgactgca
cgttgtctgagtgacagctctaaatccctcgagctgaaagaagcgagtaaagaagggtac
atccccagctacctcgaaaaggatgagccatgtgtggtgtgtggtgacaaggccacaggt
taccactaccgctgcattacctgcgagggctgcaagggtttcttccgtcggaccattcaa
aagaacctccacccgagctactcctgtaaatacgatggctgctgcatcatcgacaagatc
acccgcaaccagtgtcagctgtgccgcttcaagaagtgcatcgccgtgggcatggccatg
gacctggtgctggacgactcgaagcgggtggctaagcggcgtctgatcgaggagaacagg
gagcgacgcaagaaggaggagatggtgaaaaccctccagaaccgtccagagcccaccgac
agcgagtgggaggtgatccacctggtgacggaggcccaccggcacaccaacgctcagggc
gcgcagtggaaacagaagcgtaaattcctgccagagaagatcggccagtccccggtcacc
ccgacgtcagacggcgacaaggtggacctgaaggccttcagcgagttcaccaagatcatc
actcctgccatcacccgcgtcgtcgactttgccaaaaaactgcccatgttctccgagcta
ccctgtgaagaccagatcatcctgctgaagggctgctgcatggagatcatgtctctgcga
gccgccatgcgctacgaccccgagagcgaaacgctgacgctgagcggcgagatggccgtg
aagcgcgagcagctgaagaacggcgggctgggcgtggtgtcggacgccatcttcgacctg
ggcaagagcctggcgcagttccacctggacgacacggaggtggcgctgctgcaggccgtg
ctgctcatgagctcagaccgttcgggcctgacctccatggaccggatcgagaagtgccag
gagatctacctgctggcgttcgagcactacatcaactaccgcaagcacaacattcctcac
ttctggcccaagctgctgatgaaggtgaccgacctgcggatgatcggggcgtgccacgcc
agccgcttcctgcacatgaaggtggagtgtcccaacgaactcttcccgccgctcttcctc
gaggtcttcgaggaccaggaggtgtga
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