Pseudoliparis swirei (Mariana hadal snailfish): 130203243
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Entry
130203243 CDS
T09868
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130203243 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130203243 (msh2)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130203243 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
130203243
NCBI-ProteinID:
XP_056285189
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Position
13:complement(7161181..7170220)
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AA seq
931 aa
AA seq
DB search
MAVQPKQNLSMDSAAEPGFLSFISSMPEKPDTTFRIFDRNEFYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKIDYKA
SPGNLTQFEDILFGGATGAVGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
ETFSNLESLLVQISPKECLLAQGEGNTDGNKLREVVQRGGVLISDRKRSEFSSKDMVQDL
NRLLRAKRGETVASNTLPELDNQVAMSCLAAVVRFLELLSDESNFNSFSLATLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCREDLLRRFPDLHRLAKKMHRHSATLQDCFRVYQAVGHVPALVSAL
ERYSGSHQVLLEAVFVSPLRDLQTDFVKYQEMIETTLDMNQIDHHEFLVKASFDPALSEL
REKMDALEKSMQAVLTGAARELGLDAGKTVKLESNAVLGFYLRVTCKEEKTLRNNKKFST
LDVQKNGVRFTNGKLSSLNGEYSNNREEYEEAQNAIVKEIINIAAGYVDPLQALSDVTAQ
LDAVASFAVASVSAPVPYVRPRLLASGCRRLELQQARHPCMESNADTAFIPNDMSFAQGE
KNFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETATILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASEISCFCLFA
THFHELTALAAEQPTVHNLHVTALTSHDTLTMLYRVKSGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGEKSEEPEAKRRRTDKQEGENLIQDFLEKAKSLAAATLSDEEV
KAALKKMKQELVAKDNAYITDILSRCTPAKT
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacagaacctgtccatggacagtgcagcggagcctggcttcctg
agcttcatctcctccatgccggagaagccggacactactttcagaatattcgaccgtaac
gagttctacactgttcacggaaaggacgccatattcgcggcgaaggaagttttcaagacg
aatggggtcatcaaatatttgggctcagggagtcgcaagctggagagtgtggtgctgagc
aagctgaactttgaggccttcgtgaaagacttgctgctggtgaggcagtaccgagtggaa
gtttacaagaaccacagcaagagcagcaaggagcacgactggaagatcgactacaaggct
tctccaggaaacttgactcagtttgaggacattctgttcggcggtgcgaccggagcggtg
ggttgtgcgggagtcgtcgccgtgcggttcgcaaccggagccgacggacagcgagtggtc
ggggtcggctatgtggacgcagcccagaggacgatgggagtgtgcgagttcccggacaac
gagaccttctccaacctcgagtcccttctggtgcagatcagccccaaagagtgtctcttg
gcccagggcgaaggcaacactgacggcaataaactacgggaggtggtccagcggggcggc
gtgctgatctccgacaggaagaggtcagagtttagcagcaaggacatggtccaggatctc
aaccggctgctgagggccaagagaggagagactgtggccagcaacacgctgcctgagctg
gacaaccaggtggcgatgtcgtgcctggcggcagtggtgcgtttccttgagctgctctcg
gacgagtccaacttcaactccttcagtctcgccactctggacctgggtcagtacatgagg
ctggacaacgctgccgtgagggctctgaacctcttccagggatcacctgatgacaccagc
ggagctcattcgctggccggtctgttgaacaagtgccgcacgccgcagggccagcgtctc
gtcaaccagtggatcaaacaaccgctcatggacaaaaccaaaatcgaggaaaggctggac
ttggtggagagcttcgtgtgcgactccgagctgaggcagacctgtcgggaggacttgctg
cggcggtttccggatcttcaccgtctggccaagaagatgcaccggcactctgcgacgctg
caggactgcttccgcgtctaccaggccgtgggccacgtccccgccctcgtctccgccctg
gagagatactccggtagccaccaggttctgttggaggcggtgttcgtctctcctctcaga
gacctacaaacggactttgtgaagtaccaggagatgattgaaaccacgctggacatgaac
cagattgaccaccacgagttcctggtgaaggcgtccttcgatccagcgttgagcgagctg
agagaaaagatggacgctctggaaaagagcatgcaggcggtgctgaccggtgcagccaga
gaactaggtttggacgctgggaagacggtgaagctggagtccaacgccgtgctgggcttc
tacctgagggtcacctgcaaggaggagaagactctgaggaacaacaaaaaattctccacg
ctggacgtccagaagaacggagtgcgcttcacgaacggcaagctgagttctctgaatgga
gagtactccaacaacagagaggagtacgaggaggcccagaacgccatcgtcaaggagatc
atcaacatcgccgcaggttacgtggatcctctccaggcgctgagcgacgtgaccgctcag
ctggacgcagtggcgagtttcgccgtggcgtccgtctccgctcccgtgccgtacgtccgt
ccgcggctgctggcgagcggctgcaggcgcctggagctgcagcaggccagacacccctgc
atggagtcgaacgcagacaccgccttcatacccaacgacatgtccttcgcccagggggag
aagaacttctatattataacgggaccaaacatgggtggcaagtcgacatttatccgtcag
gtgggtgtgatcgccctgatggctcagattggctgttttgtgccatgtgaaaaggcggag
cttagcgtgattgacagcatcctggccagggtgggcgcgggagacagccaggtcaaagga
gtctccacctttatgtctgagatgctggagacggccaccatcctgcgctcggccacggag
aactcgctcatcataatcgacgagctcggcagaggcacgtccacgtacgacgggttcggc
ctggcctgggccatcagcgaacacatcgcctccgagatcagctgcttctgtctgttcgcc
actcacttccacgagctgacagcgctggcagcggagcagcccaccgtccacaacctgcac
gtcacggcgctgacctcccacgacacgctcaccatgctgtacagagtcaaatcgggtgtc
tgcgatcagagttttggaatccacgttgccgagttggcgtgcttcccgccatcggtggtc
gccatggcgaaggaaaaggccgaggagctggaggagttccaggaacccgcaggggagaag
tcggaagagcccgaggccaagagacgacgcacagacaaacaagagggggaaaacctgatc
caggacttcctggagaaggcaaagtcactcgctgctgccaccctgagtgacgaagaggtg
aaggcagccctcaagaagatgaagcaggagcttgtagccaaagacaacgcgtacatcact
gacatcctttcacgctgcactcctgcaaaaacttga
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