Pseudoliparis swirei (Mariana hadal snailfish): 130203304
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Entry
130203304 CDS
T09868
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130203304 (rnf40)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130203304 (rnf40)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
130203304 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
BRE1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-rbx1
SpoIIE
Motif
Other DBs
NCBI-GeneID:
130203304
NCBI-ProteinID:
XP_056285330
LinkDB
All DBs
Position
13:complement(528602..540624)
Genome browser
AA seq
974 aa
AA seq
DB search
MSGAGGGKRPPGGDSPPGPPEKKSKKEEKTTTTLMEPIRIAGVSSTEEMDMKVLQFKNKK
LCERLEQRQTLEDELREKIEKLEKRQATDDTTLLIVNRYWSKLDENVHVLRKRIQPDAPV
TPAPPPRPEPTPLKEDAVDLASPTPAGPPPPEGQREGERQEQKQPPLPAGPEEVLTPTEP
PQDPTTDAPLSDTAKGFLATLEHSNEEELALHLQDRMQFSKEAIACLVCVFDRLHSRSDN
MCQQVQAGAREDESQSDDVGVNDALLDENTRLRDLATLLQGRHHKMSMEYNELVDKVTGS
ETKVSEMETTVEDLQWDIEKLRNREQKLNKHLSEAMEQLKSGYSSGGSSGGLPGGQITLN
IEKFESLNAELEHNQELANNRMAELEKLQVELQEAVRESEKLKMDLRNIPEDVVKETLEY
KCLQSQFSLLYNESLGVKTQLDEARALLLTAKNAHLRQIEHMESDELSLQKKLRTEVIQL
EDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNLQLKGDVQRYKRKL
RETQMEINKLRCQSGDTWVLIGEETTSERIDVKKEENEDQEEEEERRKELERQRARERER
ETDRQRERERERQRSDELKRKDSDTLKMLRVELKKAQESQKEMKLLLDMYKSAPKEQRDK
VQLMAAERKSKAEVDELRMRVRELEERERKESKKLADEDALRKIRVAEETIEHLQKKLAA
TKQEEALLSEMDVTGQAFEDMQEQNSRLLQQLREKDDANFKLMSERIKSNQIYKLLKEEK
EELADQVLTFKTQVDAQLLVVQTLEEKEGVLQSTLAALEKELAVRTQVLELNKRKAVEAA
QLAEDLKVQLEHTQAKLKEIQVSVAENRTARERESNNLKRAQEDLSRLRRKLEKQKKVEV
YSDADEILQEEINQYKAKLRCPCCNTRDKETVLTKCFHVFCYECLKMRYDTRQRKCPKCN
CAFGANDFHRIYIA
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgccgggggagggaaacgtcccccaggaggggacagccccccgggcccacct
gagaagaagagcaagaaggaggagaagaccaccaccaccctcatggagcccatccgcatc
gctggcgtctcgtcgacggaggaaatggacatgaaggtcctccagttcaagaacaagaag
ctgtgcgagcgcttggagcagcggcagacgctggaggacgagttacgagagaagattgag
aagctggagaagagacaagccactgatgacaccaccctgctgattgtcaaccgctactgg
tccaagttggacgagaacgttcacgttctacgcaaacgcatccagccggacgctcctgtg
acgccagccccgcccccccgccctgaacccacgccgctgaaggaagatgctgtcgacctg
gcctcaccaactcctgctgggcctccacccccagagggccagcgtgagggggagcgtcag
gagcagaagcagccacctcttcctgctgggccagaagaggtgttgacccccacagagccg
ccacaggaccccacaacagacgcgcccctgagtgacactgcaaagggcttcctggctacg
ctggagcacagcaacgaggaggagctcgcgctgcacttacaggaccgcatgcagttcagc
aaggaagccatcgcctgcctggtgtgcgtctttgatcgtctgcacagccgcagtgacaac
atgtgccagcaggtccaggctggagcacgtgaggacgaaagccagtcggacgacgtcggc
gtgaacgacgctctgctggacgagaacactcgactgcgagacctggcgactctgctgcag
ggccggcaccacaagatgtccatggagtacaacgagctggtggacaaggtgaccggctcc
gagaccaaagtgtccgagatggaaacgaccgtggaggacctgcagtgggacatcgagaaa
ctccgcaacagagaacagaagctcaacaaacatctgtcagaagccatggagcagctcaag
tctggatacagcagcggaggcagctcaggtggacttcctggaggccagattacactcaac
attgagaagtttgagagtctcaatgcagagctagagcacaaccaggagttggctaataac
cgcatggccgagttggagaagctgcaggtggagctgcaggaggctgtgagggagagtgag
aagctcaagatggacttgcggaatattccagaagatgttgtgaaggagactctagagtat
aaatgtctacagtcccaattctcgctgctgtacaatgagtcccttggggtgaaaacccag
ctggatgaggcgcgggccctcctcctcacggccaagaacgcccacctccgacagattgag
cacatggagagcgacgagctgtcccttcagaagaagctgcggaccgaggtcatccagctg
gaagataccctggcccaggtgcgcaaagagtatgagatgctgcgcatcgagttcgagcag
aacctggcggccaacgagcaagcaggaccaatcaacagagagatgcgacacctcatcagc
agcctgcagaaccacaacctgcagctgaaaggtgacgtgcagcgctacaagaggaagttg
cgggaaacgcagatggagatcaataagttgcgttgtcaaagtggcgacacatgggttctt
atcggagaggagacgacgagtgagcgcattgacgtgaagaaagaggagaatgaggaccaa
gaggaagaggaggagaggaggaaggaactggagagacagcgggcgagagagagagagagg
gagaccgaccgacaacgggagcgcgagagagagaggcagcgcagcgacgagctgaagagg
aaggactctgacacgctgaagatgctcagagtggagctcaagaaggcccaggagtcccag
aaggagatgaagctcctgctcgacatgtacaagtcggctccgaaggagcagagggacaag
gtgcagctcatggccgccgaacgcaaatctaaagccgaggtggatgagttgaggatgcga
gtgcgcgagctggaggagagggagaggaaggagagcaagaagctggctgacgaagatgcc
ctgaggaagatccgagtggccgaggagaccatcgagcacctgcagaagaaactcgctgcc
accaagcaggaggaagccctgctcagcgagatggatgtcacgggccaggccttcgaggac
atgcaggagcagaacagccgcttgctgcagcagctgcgggagaaggacgacgccaacttc
aagctgatgagcgagcggatcaaatccaaccagatctacaagctgctgaaggaggagaag
gaggagctggcggaccaggtcctcaccttcaaaacccaggtcgacgcccagctgctggtt
gtgcagacgctcgaggaaaaagagggcgtcctccagagcacgctcgccgctctggagaaa
gagctggcggtccggacacaagtgctggaactcaacaagaggaaggcggtggaggccgcc
cagctggctgaggacctgaaggtgcagctggagcacacgcaggccaagctgaaggagatc
caggtctccgtggccgagaaccggaccgcccgggagagggagagcaacaacctgaagcga
gcgcaggaagacctgtcgaggctgagacggaagctggagaaacagaagaaggtggaggtg
tactcggacgctgacgagatcctgcaggaggagatcaaccagtacaaggccaagctgcgc
tgcccctgctgcaacacccgggacaaggagacggtgctcaccaagtgtttccacgtcttc
tgttacgagtgtctgaagatgcgctacgacacccggcagaggaagtgccccaagtgcaac
tgcgccttcggagccaacgactttcaccgcatctacatcgcctag
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