Pseudoliparis swirei (Mariana hadal snailfish): 130203354
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Entry
130203354 CDS
T09868
Symbol
mms19
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
KO
K15075
DNA repair/transcription protein MET18/MMS19
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130203354 (mms19)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130203354 (mms19)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130203354 (mms19)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
130203354 (mms19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS19_N
MMS19_C
TOR1L1_N
HEAT_2
PP4R3
Arm_4
PORR
Motif
Other DBs
NCBI-GeneID:
130203354
NCBI-ProteinID:
XP_056285432
LinkDB
All DBs
Position
13:complement(19023710..19037624)
Genome browser
AA seq
1106 aa
AA seq
DB search
MAADSTLLLSLVEEFVSGLQDSKAKETATCVKDGQFTILQLVEALGPSLTSSQPHTRARG
VQLLADVLQDCYGGLTEREVEVLIAFFENRLKDHYVITPPVLQGLRALTKCTVLPPGSAV
SMLRSLFQDVHVQSLMLAERACVYNMLINLMETREAELKGLGPDFVFGFVQSMDGERDPR
NLLLAFQIAKSVVLRGYDLGKFTEELFEVTSCYFPIDFSPPPNDPHGITREELIQMLRDA
LTGTPRFAEFLLPLIIEKLDSDVPSAKLDSLQTLIAGLSRYQHKDVAEFLEGLWASLRRE
VFQTSSEKIESAGLAALTALTSCLSRSVLHSDAEDALSSFLQLVLKDCKPHLSEPDLKLV
WPSAKLLQAACSASNRASHIVTGAAMPALVEQYNSRAQCSHRRTLLEVVQRFVQSAKTCD
NEESVFLAFRPSLCSMVFSALTETDSSLRITATSVLASLAQQAGLLLDSDVELAVDHLTR
LLLTEEDDKVSLAVVECAGALAALHPEVFISKMIPRLKNEMFSEPADRGDNRVASETPSH
HAVRRRCLSALAAVSSRPAVVQVTTPVLLEVLSAAHTGGVGGVVFSVEEVVLACHSLQRI
AQQVEDTEETGRCFHDVIVPRLLSLALQAALQGEGSPAGRSPLLEEEVLLAMVPVISTSC
SRLQPTLAGQTASRAVSLFLDGDVSFLPGNSFPSNIQLLKQADSWSRSQMVCLLLGCVCS
LPRSVEVPRVDDLMAALEEMSCTCSRPLAYTSAAKCFAGLANKRPPGDSLDSLIQRTVKR
VCGELDSASSPLRTQAFTLLIWVAKALLLRYHPLFTTLTDKLFSLLDDAALGPAAADGFW
LLMSDSVDILNRGCHGDVRIMYRQRFFSENSAKLVRGFNAAPQEKKPNYLKALSNIVNKL
PKEVQVTELPALLSLLLEALLCPDPGVQASTLSCLEPVLADPPPALVQQLEALVSRLLAL
TGSPAMVSEGEGLPRHEREDLLAALHPRRLLLPRPRGFAVSDPSSASAGPTAGRQEEAGE
EGGCEGQNRLVPVGKSWRKLILLLKHNQSHPGRTLSGKVEPRGPDDAPRPPPHPFGSSSI
PLSSLPTCSARVPPPSSFPPYDMFLL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggacagtaccctgctgctgtctctggtggaggaatttgtctcgggactacag
gacagcaaggccaaagaaacagcaacgtgtgtcaaagatggacagtttacaatcctgcag
ctggtggaagctctgggaccgagcctaaccagctcccagcctcacacccgagccagagga
gtccagctcctcgctgacgttttacaggattgctatggaggtctcacagagagagaagtg
gaagtgctcattgccttctttgaaaaccgtctcaaggaccattatgtcatcacaccgccg
gttttacagggactcagagcgctgacaaaatgtacagttttgcctcctggctccgctgtg
tccatgctgaggtctttgttccaggatgtccatgttcagtctttgatgctggccgagaga
gcgtgcgtctacaacatgctcatcaacctcatggagaccagagaagccgagctgaagggt
ttggggccagacttcgtgttcggttttgtccagtcgatggacggagagcgagacccccgc
aacctcctgttggccttccagatcgccaagagcgtcgtcctccgaggttacgatctaggt
aaattcaccgaggagctgttcgaggtgacgtcctgctatttccccattgacttcagcccc
cctcccaacgaccctcacggcatcaccagagaggagctcatccagatgctgagggacgcc
ctcaccgggacgccgcggtttgccgagtttctgctgccgctcatcattgagaagctggac
tctgatgttccgagtgcgaagctggactcgctgcagactctgatcgctggcttgtcgcga
tatcaacacaaggacgtggcggagttcctggagggactgtgggcgtcgctgcggagagag
gtgtttcagacgtcgagcgagaagatcgagtcggccggcctcgccgctctcaccgcgctc
acttcctgtctgtctcgctcggtgctccactccgacgccgaggacgccctcagcagcttc
ctgcagctcgttctcaaagactgcaaaccccacctgagtgagccggacctgaagctggtg
tggcccagcgccaagctgctgcaggccgcctgcagcgcctccaaccgggccagccacatc
gtgacgggcgccgccatgccggcgctggtggagcagtacaacagcagagcgcagtgttcc
cacagacggacgttgctcgaggtggtgcagcgatttgttcagtcggcgaagacctgcgac
aacgaagagagtgtgttcctggccttccggccgtctctgtgcagcatggtgttttcagct
ctgacggagaccgactccagcctgcggatcacggccacctctgtgctcgcctcgctggct
caacaagcgggtctgctgctagactctgacgtggagctggcggtggaccacctgaccaga
ctgctgctgacggaggaggacgacaaagtcagtctcgccgtggtggaatgtgctggagcc
ttagcggcgctgcaccccgaggttttcatctctaaaatgatcccacggctaaagaacgag
atgttttctgagccggcggaccgaggcgacaacagagtagcttctgagacgccttcccat
catgcagtgcggcggcggtgtttgtcggctctggccgccgtgtcctctcgacctgccgtc
gtccaggtgaccacgcccgtcctcctggaggtcctgagcgcggcacacacgggtggtgtg
ggtggtgtcgtcttctccgtggaggaggtggtgctggcgtgtcacagtctccagaggata
gcccagcaggtcgaggacaccgaggagacgggccgatgcttccacgacgtcatcgtcccg
cgcctgctgtctctggccctccaggcagcgctgcagggcgaggggtcacctgcaggtcgc
agtcctcttctggaggaggaggtcctgttggccatggtgcccgtcatcagcacctcctgc
tcccgtctgcagcccacgctggcgggccagacggcgtccagggccgtgtctctgttcctg
gacggggacgtttcctttttgcccggcaactcgttcccgtcaaacatccagctgctcaag
caggccgactcgtggagccggtcccagatggtgtgtctgctcctgggatgcgtgtgttcg
ttgcctcgcagcgtggaggtgcctcgcgtcgatgacctgatggcagcgctggaggagatg
agctgcacctgcagccgcccgctggcctacacctcggccgccaagtgcttcgccggtctg
gctaacaagcggccgccgggggattctctcgacagcctcattcagaggaccgtgaagcgg
gtgtgtggcgagctggactcggcgtcttcacctctacgcacgcaggccttcaccctcttg
atctgggttgccaaggccctgctcctccggtaccaccctctgttcaccaccctgactgac
aagctcttctctctgctcgacgacgccgctctgggtccggcggcggccgacggcttctgg
ctgctgatgagcgactccgtcgacatcctgaaccgtggttgccacggcgacgtccgcatc
atgtaccgccagcgcttcttcagcgagaattcggctaagttggtccgcggcttcaacgcc
gcaccgcaagagaagaagcccaactacctgaaggcgctgtccaacatcgtcaacaagctg
cccaaggaggtccaggtcaccgagctgccggcgctgctgtccctgctgctggaggccctg
ctgtgtcccgacccgggggtccaggcctccaccctgtcgtgtctggagcccgtcctcgcc
gacccgccgccggctctggtgcagcagctggaggcgctggtcagccggctgctggccctc
accggcagccccgccatggtgagtgagggggaggggctgccccgccatgagcgtgaggat
ctcctcgctgcgctgcatccacgccgtctcctccttccccgcccacgaggttttgccgtt
tcggacccgagttctgcgagcgctggcccgaccgctggacgacaggaagaggctggtgag
gagggcggctgtgagggccagaaccgactggttcctgttgggaagtcctggaggaagttg
attctgctcctgaaacacaaccagtctcatcctggaagaacactcagtgggaaagtggaa
cctcgtggaccagacgatgccccccgcccccccccacacccctttggatcttccagcatc
cctctatcctcattacccacctgttcagctagagtcccgcccccttcatcctttcccccc
tatgacatgtttttgttgtaa
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