Pseudoliparis swirei (Mariana hadal snailfish): 130203493
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Entry
130203493 CDS
T09868
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pswi03016
]
130203493 (trub1)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
130203493 (trub1)
Transfer RNA biogenesis [BR:
pswi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
130203493 (trub1)
Prokaryotic type
130203493 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
130203493
NCBI-ProteinID:
XP_056285669
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All DBs
Position
13:complement(14112404..14120883)
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AA seq
307 aa
AA seq
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MAGNIHNTAAPIVSSVSKLQSLNGLFAIYKKKGPTSADVLNTLKEVLLKEAGVKNPNPRK
RKKQSLKMGHGGTLDSSASGVLVVGVGNGTKMLSTMLAGSKKYVAVGELGKATDTLDASG
KVVLEEDFGHVTRLDMEEKLKAFTGDIMQVPPLYSALKKDGQRLSVMLMKGHKVEAKPAR
PVTVYNLTLQEFTPPLFTLDVECGGGFYIRSLVDDLGKALSSCAHVKELSRTKQGQFTLE
EHTLHEEQWTLEHVLRSLQPCPEQGGPAEGGPAEGEPAEGEPADGGPAEGAPVQRGPAEG
PPDGTKE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaacatccacaacaccgcggctccgatagtcagttctgtgtctaaactacag
tcgttaaatggattgtttgcgatatataaaaaaaaaggaccgacatctgcagacgtgtta
aatacactgaaggaagtgttgctcaaggaagctggtgtgaaaaaccccaacccgcgaaag
aggaagaagcagagcctgaagatggggcacggagggacgctggacagttctgccagtggg
gtgctggtggttggtgttgggaatggcacaaagatgctcagcaccatgttggctggttcc
aagaaatacgtggccgtgggggaactggggaaagcaacagacaccctggacgccagcggc
aaagtggtcctggaggaagacttcggacacgtcacccggctggacatggaggagaagctg
aaggcgttcactggtgacatcatgcaggttccccctctctactctgcgctaaagaaggac
ggccagcgcctgtccgtcatgttgatgaaaggtcacaaggtcgaggccaaacccgccaga
ccagtcactgtgtacaacctgaccctgcaggagttcacgcctcctctcttcaccttggac
gtcgagtgtggcggcgggttttacatccggagcttggtggatgacctgggaaaagcgctg
tcgtcctgcgcccacgtgaaggagctgagccgcaccaagcagggccagttcaccctggag
gagcacaccctgcacgaggagcagtggaccctggagcacgtgctgcgctccctgcagccc
tgcccggagcaggggggcccagcggaggggggcccagcggagggggaaccagcggagggg
gaaccagcggacgggggcccagcagagggggccccagtgcagaggggcccagcggagggg
cctcctgacgggaccaaggagtga
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