Pseudoliparis swirei (Mariana hadal snailfish): 130203502
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Entry
130203502 CDS
T09868
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF isoform X1
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03420
Nucleotide excision repair
pswi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130203502 (ercc4)
03460 Fanconi anemia pathway
130203502 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130203502 (ercc4)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130203502 (ercc4)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
130203502 (ercc4)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
130203502 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
Motif
Other DBs
NCBI-GeneID:
130203502
NCBI-ProteinID:
XP_056285706
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Position
13:complement(17843880..17852378)
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AA seq
897 aa
AA seq
DB search
MAGPLLDFETEMFLSLFEGDGLLVAAEGMGIDRILLQFMRVYSEQGSLVLLLNTTTPEQE
YFTEQLRAEGVTHLPRTVNSDVNSTERYDVYTEGGVLFVTSRILVVDFLTDRVPAHLISG
ILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATSFSSGFCQVERVMRNLFVKKL
YLWPRFQASVNAALDKHKPEVVELHVSLTPAMRAIQSAILDIMSACLKELKRYNPTLEAE
DLSVENTLGNAFEKTIHHYLDPLWHQLGAKTKALVQDLKVLRVLLLYLTQYDCVTFLNLL
ESLRTSQKNFGSNSGWLFLDSSTSMFMNARGRVYRIPESKKKLKVGAEAEKPKSSSALEV
KRELVLEKSPKWEALTEVLQEIERENESSQHEPGRVLICASDDRTCAQLQQYIRHGSVWM
LNRLYIRTVGKRDSAAAAAMGLELHKKGHGWPKNGAKGKEPARKKKATKGKKRPSLTLTQ
MMGNEEEDEAVAMGSSGDDGDPEEEEGEEGEQLKLDLSSDDYYGVLKEPLTVIHPLRGLT
DPHSLTRVLHEVEPAFVVLYDAEISFVRQLEIYKACRPGKTLRVYFLVYGGSTEEQKYLT
ALAKEKKAFEHLIREKATMVIPEEREGRGDTNLDLARNLEPANATTNTRKAGGQEQPKEP
SRVIVDMREFRSELPSLLHRRGLDIEPVTLDVGDYILTPDTCVERKSVSDLIGSLQSGRL
YTQCLSMTRYYKKPVLLIEFDPAKPFSLMARSDFRHEISSTDVSSKLTLLTLHFPRLRIL
WCPSPHATAELFLDLKQGRSEPDAAAAQAVTAESDVVAESAGLYNPGPYDFLLKVPGINI
KNYRAVVKNADNLADICKLSQDKLAEILGHAHNAKLLYEFLHNAADVPAPVQKSKQT
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggcggggccgctgctcgacttcgagaccgagatgttcctgagcctgtttgaaggcgac
gggctgctggtggcggcggaggggatggggatagaccgcatcctgctgcagttcatgcgg
gtttactcggagcaaggcagcctggtcctcctgctcaacacgaccacacctgaacaggag
tatttcacggagcagctgcgagcggagggcgtgacccacctgccccggacggtgaacagc
gacgtcaacagcaccgagcgctatgacgtctacacggagggaggggtgctgttcgtcacc
agcaggatcctggttgtcgacttcctcaccgaccgcgtccctgctcatctcatatcgggc
atcctggtgtatcgtgctcataaaatcattgagtcgtgtcaggaggccttcatcctccgt
ctcttcagacagaagaataagacgggcttcataaaggccttcaccgacaaggccacgtcc
ttctcctccggcttctgccaggtggagcgcgttatgagaaacctcttcgtcaagaagctc
tacctttggcccaggtttcaagcgtcggtaaatgcagcactggacaagcacaagccggag
gtggtggagctccacgtgtcactgacgcctgcgatgagggccatccagagcgccatcctg
gatatcatgagcgcctgtctgaaggagctgaaacgctacaaccccactctggaggcggag
gacctctcggtggagaacacgctgggcaacgccttcgaaaagaccatccaccactacctg
gaccccttgtggcaccagctgggagcgaagaccaaggccctggtccaggacctgaaggtg
ctgagggttctcctgctctacctcacgcagtacgactgcgtcaccttcctaaatctgctc
gagtcgctgcgcaccagccaaaagaacttcggatcaaattccgggtggttgttcctcgac
tccagtacctccatgtttatgaacgcccggggtcgagtgtaccgcatcccggagagcaag
aagaaactcaaagtgggggcggaagcagagaagccgaagtcgtcctctgccttagaggtg
aagcgggaactggtgctggaaaagagccccaagtgggaggctctgactgaggtgctgcag
gagatcgagagggagaacgagagctctcagcatgaaccaggtcgagtgctgatctgtgcc
agcgacgacaggacgtgtgcccagcttcagcagtacatcaggcacggctccgtctggatg
ctcaaccgactttacatccgcacggtcggcaaacgggactccgccgcggccgccgccatg
ggcctcgagttgcacaaaaagggccacggctggccgaaaaacggagccaagggaaaggag
cccgctcgcaagaaaaaagccacaaagggcaaaaaaaggccgtccttgaccctgacccag
atgatggggaatgaagaagaggacgaggcggtggcgatgggcagcagtggagatgatggc
gacccagaggaggaggaaggagaggaaggagaacagctgaagctggatttgtcgtcagac
gactactacggcgtcctgaaggagccgctcaccgtcattcacccgctcaggggtctcacc
gacccccacagcttgacgcgggtgctgcacgaggtggagccggctttcgtggtgctgtac
gacgccgagatcagttttgtccgccagctggagatctacaaagcctgccggcccggaaag
acgctgcgggtgtatttcctcgtctacggaggctcgacggaagaacagaagtacctgacg
gcgctggctaaggaaaagaaagccttcgagcacctgatcagggaaaaggccaccatggtc
atcccagaggagcgggaggggcgaggagacaccaacctagaccttgctagaaatttggag
cctgccaatgccaccaccaacacccgcaaagcaggaggccaggagcagcccaaggagccc
tcgcgagtcatcgtggacatgcgggagttccgcagtgaattgccctccttgctgcaccgc
cgcgggctggacatcgagcccgtcaccttggacgtgggcgactacatcctgaccccggac
acctgcgtggagcgcaagagcgtcagcgatttgattggctcgttgcagagcgggcgcctc
tacacccagtgtctctccatgacccggtactacaagaagcccgtgctgctcatcgagttc
gacccggcgaaaccgttctccctgatggcccgatccgatttccgtcacgagatatcgtcg
acggacgtctcttcgaagctcaccttgctcacgttgcatttcccccggctgcgtatcctc
tggtgcccctcgccgcacgccacggccgagctcttcctggatctgaagcaaggtcgctct
gaacccgatgccgcggcagctcaggccgttacagccgagtcggacgtggtggcggaatcg
gcgggactctacaaccccgggccttatgacttcctgttgaaagtgcctgggatcaatata
aaaaactacagggctgtcgtaaaaaacgcagacaacctggcagatatatgcaaactcagc
caggacaagctagcagaaatcctcgggcatgctcacaacgcgaagttgctgtacgaattt
ctgcacaatgctgctgatgtccccgctccggtgcagaaatccaaacagacatga
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