Pseudoliparis swirei (Mariana hadal snailfish): 130203527
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Entry
130203527 CDS
T09868
Symbol
tnrc6ba
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130203527 (tnrc6ba)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130203527 (tnrc6ba)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130203527 (tnrc6ba)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130203527 (tnrc6ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
130203527
NCBI-ProteinID:
XP_056285746
LinkDB
All DBs
Position
13:17953519..17974493
Genome browser
AA seq
2177 aa
AA seq
DB search
MEDKKRKKDDKRKREASQKATEQKNKVPDLTKPVSAQSPATQSSSASPSPGPTPSASPSP
ATLGPGSAASPSQGGNNAKRLAVANGQPTSTTISSSTAGGPGAAGNGSTSSGGGAQAPQQ
QPRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGGGGGGGDGPNANMAAVSDSGA
AASSSLALTSSVAASTTTTSNYANSMWGASSGSQVSSQGREKVIVDGNDLEEWPSIAGSE
GVGASFTGAGGVSSNNGIPVNGISASGNQSSPTSSFSLPNECMQSSNGVAWGTAASPGHL
GGGNAVASAGPPLQQPSSLSKASAVPGSHDASGPVDGSSGIPGANFNPNANPSAWPALVQ
QDGPAAAGEGGPSSFHHQGPGGSLSANNSASLSLALGGGSAGVLGGPPPLSVNQSSTHQR
QLHQMQSRDREMGVGKWDSESAGPKIVGGEGIGAGMDRGVGGSEMSVGDHSLASSWRGQS
SYAAANSKLGASRTDGWEAGVGGTGGFEAAEGDNGTSGWGYQSSTSGVGAWGSAGTEGNS
SQTSGVSQGGWGSSGVGGERGVSGGEWGGSSTGIGGANSGGEGIAGACSSNSSSSGGSTA
GNAPATSSSSSTATTMTRAWDNHKGESETGEWGGGVEPQGAQGGSSSSGGNSRNGAEPNS
RHSCPPHPEPNAEAALENLLSRSDLDPRVLSNTGWGQTQIRQNTSWDFEEHGRQSKGRSS
SSATSKHASSLGGSSQYSGGPRTLITDSMGPGVNPSLVPSAGSSGEGWESSNSSSSGASL
SGRAPPTSGPNMRNLGVSQSGPVTKTGPGMGSGVMPGHSQQGKATGWGGGGMGAGDTQQA
KSWGNEEWRDGGSGRGGNGGGRGDVGQQGDSVSAGWGGNKEEKGAGGWKEMGGNGGGSGW
GAGQKVGAGRDWGEQQSKSNSGGGGWEDDRKNGGGNSGGDSGVGSWGSWDEGAPRRTWGA
GGTGGGGGGGGGGLGSKPHQSWSGGNKMHQMPNSQPGSITAPQAQQQQQQSQPRNQHPQR
QPALDQGAMQGVGGRKPISQAQNQNQNSGWTSGPIPGSSGGGGSGSEPSGWEEPSPQSIS
RKNEIDDGTSAWGDPTHYNYKPVNLWDKNGAPAGQQPHDQQPHSQVQPQTQAQAQAQAQA
QAQAKQQQQQQQQQQQQQQQPPPIQQQPSRQAAALGGNRDFNTGHGPVKTSAIGPSGWGG
TSPTSPSIDNGTAAWGKTTDAPSGWGDPDDAEGKTAGWGNPPPNPIQSGSKSMQDGWGDK
EASVAASRHPSWEEEEEGGGGGSSGGMWNSPGSQGSSSSWGQGSNGGWGQTHPGKKPTSK
GSLKVGGGDSWMSPINKQFSNMGLMNDDPGSQNIDLSLGSLQEKKMDMEKRGMGMNDYNG
DIRKGGRGGGAGMAYRPPGSKDAAPGDAGSYYDKTLPLTNQDWCLGEEGPCSLYSPPTIY
KPQSLFNHNIPFRQGGHGIFGSSGGMAQSRHQPPVPPINPSPGIRAQVPHQFLSPQVPAS
VLKQMPPPSGSVGGVGGVGGVAGVGGGVFPPQLSPQHIAMLSSIYPPHIQFQLACQLLLQ
QQQQPQQQQQQQQQQQQQQLLQNQRKFPPNVRQQADPQQLARIMAVLQQQRQQQQVGGLG
GSSKLSPSHHGGVGGVGPKLLGSDSLPHPGLAGTVADLHQKTLGPYSGFGSGVNLPGLDL
GGSVGGGPGGMKDLGIQQQSRFKWMMEGQSSPDTSSPDNAFHKNGPVTPMKMPGGSPYSQ
YDMMVGDGLGDNWHRTPGTKMGTKPPTTPSWPPEFQPGVPWKGIDRVDPDSDPYMTPGSM
MGNAVSPNLNDTEHQLLQDNTDSTPPLNTMLPSPGAWPYSASDSPLNNAHNSVKYTDYKT
SWPPEPIGHKSWKATRGSSQSQLSRPPPGLASQKQPSPSNWSGGAPRLAGRGWGGGSSTA
ASTWSDGSSRESCWLVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGTALIRYGSKQE
AAKAQSALHMCVLGNTTILAEFVSEEDVARYIAHSQAGGAGSGGTTAGSAGSGPTASSTV
GSNGNGGSCERGVAGGGGGGVEGGGGSAAGGAGNGGSGPSSSGWQSLDSTGSSLDQSGAQ
GPGLGIFAQWSSNGTGMGGAGGVEGGRQGLWGGMGGMSGAGYPSSSSLWGSPALDDRHQM
GSPASLLPGDLLGGGAD
NT seq
6534 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaagacgacaaaaggaaaagggaagcctctcagaaggcc
acagaacaaaaaaacaaagtgccagacttgaccaagccggtgtctgcccagtctcctgcc
actcagagcagctctgcctcccccagccctggacccaccccctctgcctccccatcccca
gccaccttgggccctggcagtgctgccagcccgtcacagggcggcaacaatgccaagcgc
ctggcggtggccaacggacagccaacctccaccaccatttcttcctccaccgctggcggc
cccggtgctgctggaaacggcagtacgagtagcggaggcggagctcaagcgcctcagcag
caaccgcgctacatgccgagagaagtgccaccgcgattccgctgccagcaggaccataaa
gtgctactgaagaggggtcagccgccactgtcctccatgctgcttggaggaggaggagga
ggaggaggaggaggagatggccccaatgcaaacatggctgctgtctcagattctggtgca
gctgcctcatcctcattggccctcacctcatcagttgctgcttctactactactacttct
aattatgcaaattccatgtggggggcaagctcaggcagccaagtctcctctcagggcagg
gagaaggtgatcgtggatggcaacgacctggaggaatggccgagcatcgctggcagtgaa
ggggtaggagcttctttcactggggctggaggggtcagcagcaacaatgggattcctgtg
aacggcattagtgcctctggcaaccaatcctcacccacttcctcgttctctttgcccaat
gaatgtatgcagtcgtccaacggtgtggcgtgggggacggctgcctccccgggtcatctc
ggaggaggaaatgcagtagcttcagctgggcctccgctacaacagccctcctcactttcc
aaagcctccgctgtgccagggagccatgatgccagtggccccgttgacggcagcagtggg
attccaggtgccaacttcaatccaaatgccaacccttcggcctggcctgccctggtacag
caggatgggcccgctgctgcaggggaaggaggtccgtcttccttccatcaccagggccca
ggagggtctttatctgccaacaactctgcttccctgagcctggcgttgggaggcgggtca
gccggggtgctggggggtcccccacctttatctgtgaatcaatcaagcacccatcagcgg
caacttcaccaaatgcaatccagagaccgagagatgggagtgggcaagtgggacagcgaa
tcagcgggaccaaaaatcgtagggggggaagggattggtgcaggaatggaccgtggtgtg
ggaggaagcgagatgagtgtgggagaccacagccttgcctcctcgtggagaggccagtct
tcttatgctgcagctaactccaaattgggtgcctcaaggactgatggatgggaggctgga
gtaggtggcacagggggattcgaagctgctgaaggagataatgggacctcgggttggggg
tatcagagttcaactagtggggttggtgcttggggcagtgctggaactgagggaaacagt
agtcaaacctccggggtatctcagggagggtgggggtcatcaggagtcggaggagagaga
ggagtttctggtggtgaatggggtgggagctccactggtattggtggcgctaattcagga
ggggagggaattgctggagcatgcagcagtaacagcagcagtagtgggggcagcacagct
ggcaacgccccagccacctcttcctcttcctcaacagccaccactatgaccagagcttgg
gacaatcacaagggggaaagtgaaacgggggaatggggtgggggagtagaaccacaggga
gcacagggaggatcttcctctagtggtggaaattcgagaaatggggccgagcccaacagt
agacacagttgtcctccccaccctgaacctaacgctgaagctgccttagaaaacctgctc
agccggtctgatctggaccctcgcgtgctgtccaacacgggctggggccaaacacagatc
cgacaaaacacgtcctgggactttgaagaacatggacgacagagtaaaggtagatcatca
tcatcagctacatcaaaacacgcatcttctcttggtggttcttctcagtattctggtgga
cccaggactctaatcactgattcaatgggtccaggggtcaatccctccctggttccatct
gctgggtcgtccggagagggctgggagagcagcaacagtagcagtagtggggcctccctg
tctgggagagccccaccaacttcaggccccaacatgaggaatcttggcgtctcacaatct
gggccagtgaccaaaacaggacccggaatggggtcgggtgtaatgccaggacatagccag
cagggtaaggctacaggctggggtggaggagggatgggggccggggatacccagcaggcc
aagagctggggaaacgaggaatggagagacggtggtagtggtagaggaggaaatggagga
gggcggggtgatgttgggcaacagggcgactcggtgagtgcaggctggggaggaaataag
gaggagaaaggggcaggggggtggaaagaaatgggagggaatggaggaggcagtggatgg
ggagcaggccagaaggttggggcaggtagggactggggagagcaacagtccaaatcaaat
agcggaggagggggatgggaggatgacaggaagaatggaggcggaaactcaggtggggat
tcaggtgtgggtagttggggcagctgggatgagggtgctccgcggagaacctggggagca
ggtggcacaggaggaggagggggaggaggaggagggggcttggggtctaaaccccatcaa
agttggagtggaggaaacaaaatgcaccagatgccaaacagccagccgggttccatcaca
gctccgcaggcacaacagcaacagcaacaatcacagccccgcaatcagcatccgcagcga
caaccagcgttggaccaaggggctatgcaaggggtcgggggtcggaaacccatctctcaa
gcccagaatcagaaccaaaactcaggctggacctcagggcccattcctggcagctccggt
ggaggtggatctggatctgaaccaagcggatgggaggaaccctcgccgcagtctataagc
agaaagaacgagatagatgatggaacatcagcatggggcgacccaacccattacaactac
aagccagtcaacctgtgggataagaacggcgcccctgctggacagcagccacatgaccag
cagccacatagccaggttcagcctcaaactcaagctcaagctcaggctcaggctcaggct
caggctcaagctaagcaacaacaacagcaacaacaacaacagcaacaacagcaacaacaa
ccacctccaatacagcagcagcctagcagacaagctgcagcacttggaggtaacagagac
ttcaacactggccatggaccggtaaaaacttcagctattgggccgtcaggttggggtggt
acttctccaacgagtccttcaatagacaatggcacagcagcgtggggaaagacgactgac
gcaccttctggttggggagaccccgacgacgctgaagggaagacggcgggctggggcaac
cctcctccaaaccccatccaatctggttcaaagtctatgcaagatggctggggggataaa
gaggcctctgtggctgcctcgcgtcacccaagctgggaggaggaggaggaaggaggcggc
ggcggcagcagcggcggcatgtggaacagccccggctcccaaggaagcagctcgtcttgg
ggacaaggaagcaatgggggctgggggcagacccaccctgggaagaaacccaccagcaag
ggttcactgaaggtcggcggaggagactcgtggatgagccccatcaacaagcagttctct
aacatggggctgatgaatgatgatcccgggagccaaaacatcgacttgtctctgggttct
ctccaggagaagaagatggatatggagaaaagaggcatggggatgaacgattacaatgga
gacataaggaagggaggaagaggaggaggagccgggatggcttatcgtccacctggttcc
aaagacgcagcacctggggacgctgggtcctactacgacaagaccttgcctttgaccaat
caggattggtgccttggggaggagggtccttgctctctgtactcaccacccactatctac
aagccccaatccctcttcaaccacaatattccctttagacaaggcggtcacggtatcttt
ggcagtagtggagggatggctcagtcaagacatcagccacctgtcccacccataaacccg
tccccagggatacgagcgcaagtgcctcatcagttcctgtcacctcaggtgccggcctcc
gtgctgaagcagatgccccctcccagtgggagcgtggggggtgttggtggcgtgggagga
gtggcgggcgtcgggggaggtgtgttccccccacagctgtctccccagcatattgccatg
ctcagcagcatctatccacctcacatccagttccagttggcttgccagctcctcctccag
cagcagcagcagccgcagcaacagcagcagcagcagcaacaacagcagcaacagcagctg
ctgcaaaaccagaggaagttcccaccgaatgtgcggcagcaggctgaccctcaacagctg
gccaggatcatggcagtgctccagcagcagaggcagcagcagcaggtcgggggtttaggc
ggcagctccaagctttccccctcccaccatgggggagttgggggagttggtcccaaactg
ctgggctctgattccctgcctcatccaggcctggcgggaactgtggctgatctgcaccag
aagactcttggaccatattccggatttggatctggggtaaacctcccaggtctggacctg
ggcggctctgttggagggggtcctgggggcatgaaggacctcgggattcagcagcagtcc
cgtttcaaatggatgatggagggacagtcttctccagacacctcctcacccgacaacgca
ttccacaaaaacggtcccgtcacccccatgaagatgccggggggctcgccctactcccag
tacgacatgatggttggggacgggctgggagacaactggcatcgcacccccggcaccaag
atgggtaccaagccccccaccacgcccagctggccccctgagttccagcccggtgtgccc
tggaagggaatcgaccgcgtcgaccctgactccgacccttacatgaccccagggagcatg
atgggaaacgcagtgtcccccaatctcaacgataccgagcaccagttgttacaagacaat
acagattccacccctcccctcaacaccatgctgccttcacctggtgcctggccctacagt
gcctcagacagtcccctcaacaatgcacacaactcagtaaagtacacagactacaagacc
agctggcccccagagcccatcggacacaaatcctggaaagcgacccgtggcagcagccag
agccagctgtcccgcccacctccaggactcgccagtcaaaagcagccatcgccttccaat
tggtctggaggagcccctcgattggctggccggggctggggcggcggctctagcaccgct
gcctcaacctggagtgatggcagctctcgggaaagctgctggttggtgctcagcaacctc
acaccacagatcgatggctccactctgaggaccatctgcatgcagcatggccccctgctg
acctttcaccttggcctgacccagggcaccgctctgattcgctacggctccaaacaggag
gcggccaaggcccagagcgcactccacatgtgtgttctgggtaataccaccatcttggcg
gagttcgtgagcgaggaggacgtggctcgctacattgcacattcccaggcaggaggagcg
ggcagcggaggaaccacggccgggtccgcaggctccgggccgacggcctcctccacagtg
gggtccaacggtaacggagggagctgcgagagaggcgtagcgggaggaggaggaggagga
gtagaaggaggaggaggctccgcagctggaggagcaggaaacggaggatccgggccttcc
agctccgggtggcagagtctggacagcacgggcagctcattggaccagtccggcgcccag
gggcccgggctgggcatcttcgcacagtggagcagcaacgggaccgggatgggcggggcc
ggcggcgtggagggcgggaggcagggtctgtgggggggcatgggggggatgagcggggcg
gggtaccccagcagcagcagcctctggggttccccggcacttgacgatcgtcaccagatg
ggcagccccgcctcgctgctgcccggggacctgctgggcgggggggccgactga
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integrated database retrieval system
