Pseudoliparis swirei (Mariana hadal snailfish): 130203741
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Entry
130203741 CDS
T09868
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1-like isoform X1
KO
K17908
autophagy-related protein 18
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04136
Autophagy - other
pswi04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130203741
04136 Autophagy - other
130203741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130203741
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130203741
Membrane trafficking [BR:
pswi04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
130203741
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
130203741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WD40_MABP1-WDR62_2nd
WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_RSE1_2nd
EIF3I
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
130203741
NCBI-ProteinID:
XP_056286108
LinkDB
All DBs
Position
13:16705871..16714365
Genome browser
AA seq
484 aa
AA seq
DB search
MAAPMESQESQDAPDGADAQRAFICASFNQDTTSLSVGTKTGYRLFSVTAVDKLDCIHEG
VQECVKEVTAEGAPALSEGKHAIRIHGLSLVPLPVECQDVYIVERLFSSSLVVVVSLSMP
RRMNVYHFKKGTEICNYSYSNNILSVRLNRQRLVVCLEESVYIHNIKDMKLLKTLLNTPS
NPTGLCALSVNHSNSYLAYPGSATIGEITVYDANNLSTLTLIQAHDSPLAALTFNGSGTK
LASASERGTVIRVFSIPEGTRLFEFRRGMKRYVSISSLSFSADGQFLCASSNTETVHIFK
LEQHSPSLDEESPTWSAYMGKMFTAASTYLPSQVSDMMHQDRAFAMVRLNMVGLKTISAL
ATIQKLPRLLVASSDGCLYIYNVDPQDGGECVQIQKHRLFDSSEKQVEQNSAANPEDVSP
QPASQSYAATVALPSTPPSSTTLTGYSEDGGVEKGDVIPEHEFAEGPVCLDDENEFPPFG
NQSN
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccgatggagtcacaggagtcccaggacgcaccggacggcgctgatgcgcaa
cgagccttcatctgcgcctcgtttaaccaggacaccacctctctgtcggtgggcaccaag
accggctaccgcctcttctcagtcactgctgtggacaagctggactgcatccacgaggga
gtgcaggaatgtgtaaaggaagtgacggcagaaggtgcgccagctttatctgagggaaag
catgcgatccgtatccacggtctttcactcgtccctctcccagtagagtgtcaggacgtt
tacatcgtggagcggctgttctccagcagcctggtggtggtagtcagtctgtccatgcca
cggcggatgaacgtctaccacttcaagaaaggcacagagatctgtaactacagctactcc
aacaacatcctctccgtccggctcaacagacagcggctggtggtgtgcctggaggagtcg
gtctacatccacaatatcaaagacatgaaactactcaaaaccctgctaaacacacccagc
aaccccacaggtctttgcgcgctttccgtcaaccacagtaactcctacctggcgtacccc
ggcagcgccaccatcggagagatcaccgtctacgacgctaacaacctgagcaccctgacg
ctgatccaagcccacgacagtcccctggcggccctcaccttcaatggctccggcaccaaa
cttgccagcgcttcggagaggggcaccgtcatcagagtcttcagcattcctgaaggaacg
aggctgtttgaattccgcagaggaatgaaaaggtatgttagcattagttcgttgtccttc
agcgccgatggccagttcctgtgcgcctccagcaacactgagacggtccatatcttcaaa
ctggagcagcacagcccaagtctagacgaggagtctccgacatggtcggcgtacatgggc
aaaatgttcacggcagccagcacctacctgcccagccaggtgtccgacatgatgcatcag
gaccgcgccttcgccatggtgcgactcaacatggtcggcctgaagaccatcagcgccctc
gccacgattcagaagctccctcgcctgctggtggcgtcctcagatgggtgtctctacatt
tataatgtggatccacaagatggaggcgagtgcgtccagatccagaaacacaggctgttc
gactccagcgaaaagcaggtggaacaaaactcggcggcgaatccagaggacgtctctccc
caaccagccagccaatcgtacgctgccactgtggctctgccttcaaccccgccctcctcc
accactctcacaggttactccgaggacggcggcgtcgagaagggtgacgtcatccccgag
cacgagttcgccgagggccccgtgtgtctggacgacgagaacgagttccctccgttcggc
aaccagagtaattga
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