Pseudoliparis swirei (Mariana hadal snailfish): 130203941
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Entry
130203941 CDS
T09868
Symbol
itgb5
Name
(RefSeq) integrin beta-5
KO
K06588
integrin beta 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04145
Phagosome
pswi04148
Efferocytosis
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04810
Regulation of actin cytoskeleton
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130203941 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
130203941 (itgb5)
04148 Efferocytosis
130203941 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
130203941 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130203941 (itgb5)
04810 Regulation of actin cytoskeleton
130203941 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130203941 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130203941 (itgb5)
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
130203941 (itgb5)
Cell adhesion molecules [BR:
pswi04515
]
Integrins
Integrin beta subunits
130203941 (itgb5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
PSI_integrin
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
130203941
NCBI-ProteinID:
XP_056286381
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All DBs
Position
2:21929346..21954206
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AA seq
838 aa
AA seq
DB search
MLGAAGRRSSETGGRLRRTRGAERGNTPREGMRSPGTLAWRAALCCVLLESVLLPARGLN
MCSSGSATSCEECLLIHPSCAWCAQEEFGRGRSLTSRCDFSHSLQQRGCAAPFIESPTSS
VSVVQSMPLSSKGSGETHYDVVQMAPQKISVSLRPGAQTSFGLQVRQVEDYPVDLYYLMD
LSLSMKDDLDTIRNLGTKLALEMGKLTSNFRLGFGSFVDKNMSPFSYTAPKYQQNPCSGY
KLFPNCVPTFGFRNILSLTDKVDRFNEEVQKQMVSRNRDAPEGGFDAILQAAVCKEEIGW
RKEAYHLLVFATDDVPHLALDGRLGGLVQPHDGRCHLDEDNEYSASTRMDYPSLALLGEK
LAENNIFLIFAVTKRLYVIYKNFTALIPGTTVEILDQDSKNVIQLIIAAYNNIRSKVELS
VWDHPEDIGLSFTATCQDGEPLPGRRKCSDLKIGDTVSFDVSVEARSCPPHGADRRRSFT
IKPVGFKDRLEVAVDYRCDCGCSREAQSNSSICSSTGTYDCGTCHCEPGYLGARCECQEG
GASSSYRSACREAEGKRLCSGRGECSCNQCLCYESEFGKIYGGYCECDDFSCARHKGVLC
SGHGECHCGECKCHAGYVGDDCNCPTETAACVGADGQMCGGRGRCVCGRCRCTEPGAFGD
TCEKCPTCPDACGTKRECIECRLFNSGRLQDNQTCQRLCKDEILTVETLDSEDPGSVLCL
YKTDDDCVMKFTYSEHASGRSVLTALEEPECGGGGPEAPVVLLAVVGSILMVGVVLLAVW
KLAITVHDRREFARFQSARSRARYEMASNPLYKQPNASTHFVETDFDSYGKSFNGGVH
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgctcggcgcggcgggtcggcggagcagtgaaaccggcggtcggctgcggaggacgaga
ggcgcggagcggggaaacacgccgagggaaggcatgcggagcccggggacgctggcgtgg
cgagccgccctgtgctgcgtgctgctggagagcgtgctgctgcccgcgagaggtctcaac
atgtgctcgagtggcagcgctacttcctgtgaagaatgcctcctgatccatcccagttgc
gcctggtgcgcacaagaggagtttgggagggggcggagtctgacgtcccggtgtgacttc
agccacagcctgcagcagcgcggctgcgcggcgccgttcatcgagtcccccaccagcagc
gtgtcggtggtgcagagcatgccgctgagctccaaaggctccggggagacccactacgac
gtggtccagatggcgccccagaagatctccgtcagcctgcggccaggagcccagacgtcg
ttcgggctgcaggtgcgccaggtggaggactacccggtggacctgtactacctgatggac
ctgtccctctccatgaaggacgacctggacaccatccgcaacctgggcaccaagctggcg
ctggagatggggaagctcaccagcaacttccggctgggcttcggctccttcgtggacaag
aacatgtcccccttctcctacacggcgcccaagtaccagcagaacccctgcagcggatac
aaactgttcccgaactgcgtgccgaccttcgggttccgtaacatcctctccctgacggac
aaagtggaccgcttcaacgaggaggtgcagaagcagatggtgtctcgcaacagggacgcg
cccgagggcggcttcgatgccatcctgcaggccgccgtctgtaaggaggagatcggctgg
aggaaggaggcgtaccacctgctggtgttcgccacggacgacgtgccccacctggctctg
gacggccggctgggggggctcgtgcagccgcacgacgggcgctgtcacctggacgaggac
aacgagtacagcgcctccaccaggatggactacccctctctggctcttctgggggagaag
ctggctgaaaataacatcttcctcatctttgctgtcacaaaacgtctttacgttatttac
aagaacttcacagcactcattcctggaacgacggtggagatcctggaccaggactctaag
aacgtcatccagctcatcatcgcagcttacaataacatccgctccaaggtggagctgtcg
gtgtgggaccacccggaggacatcggcctgtccttcaccgccacctgccaggacggcgag
ccgctgccgggccgcaggaagtgctccgacctgaagatcggagacacggtgtcgttcgac
gtgagcgtggaggcgaggagctgcccgccgcacggcgccgaccggaggaggagcttcacc
atcaagccggtgggcttcaaggaccgcctggaggtggccgtggactaccggtgtgactgc
ggctgcagccgcgaagcgcagagcaacagcagcatctgcagctccacaggtacttacgac
tgcggcacgtgccactgtgagccgggctacctgggcgcccgctgcgagtgccaggagggc
ggggccagcagctcgtaccgcagcgcctgccgcgaggccgagggcaagcggctgtgcagc
ggccgcggagagtgcagctgcaaccagtgcctgtgctacgagtcggagttcggcaagatc
tacggaggctactgcgagtgcgacgacttctcctgcgcgcggcacaaaggagtcctctgc
tcaggtcacggtgaatgccactgcggcgagtgcaagtgccacgccggctacgtgggcgac
gactgcaactgccccacggagacggcggcctgcgtcggcgccgacggccagatgtgcggc
ggccgcggccgctgcgtgtgcggccgctgccggtgcaccgagcccggcgccttcggggac
acctgcgagaagtgccccacctgccccgacgcctgcggcaccaagagggagtgcatcgag
tgccggctcttcaactcgggccggctgcaagacaaccagacctgccagcgcctgtgcaaa
gacgagatcctcacggtggagaccctcgactccgaggaccccggctctgtactctgtctc
tacaagacggacgacgactgcgtcatgaagttcacttactctgagcacgccagcgggcgc
tccgtcctcacggccctcgaggagcccgagtgcggcggcggcgggcccgaggcgcccgtg
gtgctgctcgccgtggtcggcagcatcctgatggtgggcgtggtgctgctcgccgtctgg
aagctcgccatcaccgtgcacgaccgccgggagttcgcccgcttccagagcgcacgctca
cgagcccgatacgagatggcctctaacccgctctacaagcagcccaacgcgtcgacacac
ttcgtggagacggatttcgactcgtacgggaagtccttcaacggaggagtccactga
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