Pseudoliparis swirei (Mariana hadal snailfish): 130204001
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Entry
130204001 CDS
T09868
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130204001 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130204001 (xrcc5)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
130204001 (xrcc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
DUF6005
VWA
Motif
Other DBs
NCBI-GeneID:
130204001
NCBI-ProteinID:
XP_056286454
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Position
2:complement(11953653..11961481)
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AA seq
723 aa
AA seq
DB search
MAGAKSASVLCLDVGFSMSNSAPGEEPHFELAKKVIQKFVQRQVFAETKDELALVLFGTD
STKNSLDQDGQYQNITVHRHLMIPDFELLEEIENQVHPENQQADWLDALVVCMDLLQTET
EGKKYDRLNISLLTDLNTRASSEQIDVIIENLKQAGITLQFFLPFPVEDDEESGRDAGRG
SPGHPGMGKGLSDEQKSSVDIVKHIMLNLDEENGLDEVYSFRNAIEQLCMFKRIERKPMA
WPCQLTIGSCLPIRIIGYKAVTEERLKKSWTTIDAQSNKKDDVKRETVYCLDDDNETEVQ
KDDTIQGFRYGSDIVPFSKVDQEQMKYKHDGKCFAVLGFTKQNTIRRHHFMGTQVIKVFS
AKDDEHAGVALSALIRALDELDMVAIVRYAYDRRSNPQVGAAFPCIKKDHECLIYVQLPF
MEDLRHFSFPSLENNKKFTPSDAQLSAVDSLIDSMMLSEENDNGEQEDMFKVHHIPNPAF
QRHFQCLHHRAVSPGTPLPPMEAWLKAALECPEVIAERCQGPLEEVKRKFPLTEVEKKKK
LKTSAQIFGKDSGEPDAKMAKGDEEEDYNLADIAEGSVTSVGSVAPTKDFRTLIKKKCLP
FGEVCQQLICRLEQLLSNKNTSYFMKSITCILAFREQSVELGDANLYNGYLRSLKKSIPN
RGLEVFWDLLVQDAVTLISKDEVKGSSVSKTEADQFLVTEEKIKEAAAPPADTGDVDDLL
DMM
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgccaaatccgcgtcggtgttgtgtctggatgttgggttctccatgtccaac
tcagccccgggggaggagcctcattttgaacttgccaaaaaagtcattcagaagtttgtc
cagcgccaggtttttgcagagaccaaggacgaactggctttagttctgtttggcacagac
tccaccaagaactcactggaccaggacggccagtaccagaacatcacggtgcatcgtcac
cttatgataccggatttcgagcttctggaggaaatagagaatcaggtccacccagagaat
cagcaggctgattggctggatgctcttgttgtgtgcatggatctcctgcagacagaaaca
gagggtaagaagtatgatcgtctcaacatttccctcctgactgacctcaacactcgggcc
agctcagagcagatagacgttatcattgaaaacttgaaacaagctggcatcaccctgcag
tttttcttgcctttccctgtcgaggatgatgaagagagtggacgagatgcgggcagagga
agcccaggtcacccgggcatgggcaaaggtctgtccgacgaacagaagagcagcgtcgac
attgtgaaacacatcatgctaaacctcgatgaggagaacggcctggatgaagtttactcc
ttcaggaatgcaattgagcagctgtgcatgttcaagcgtatcgagaggaaacccatggcc
tggccctgtcagctgaccatcggcagctgtctgcccatccgcattattggatacaaagca
gtgacagaagagagacttaagaaatcgtggactacaattgatgctcaatccaacaagaaa
gacgacgtgaagagggagactgtctattgtctggatgatgacaatgagacagaggtgcag
aaggatgataccatccaaggttttcgttatggaagtgatattgttcccttctccaaagta
gatcaagaacagatgaaatacaagcacgatgggaagtgctttgctgtccttggcttcacc
aaacagaacacgatacgtcgccatcatttcatggggactcaagtcatcaaggtgttttct
gccaaggatgatgagcatgcaggagttgcgctgtccgctctcatccgagcgttggatgaa
ctcgacatggtggccattgtacgttacgcctatgaccggcgcagcaaccctcaagtggga
gcagccttcccctgcatcaagaaggaccatgagtgtctgatctacgtccagctgcctttc
atggaagacctcagacatttttcatttccttctcttgaaaacaacaaaaagttcactccg
tcggacgctcagctgtctgctgtggactctctcattgactccatgatgttgtcagaagag
aatgataatggagagcaagaggacatgttcaaggtccaccacattcccaaccctgccttt
cagagacacttccagtgtctgcatcatcgggctgtgagccccggcacccctcttcccccc
atggaggcatggctgaaggctgctcttgaatgccctgaggtcattgctgaacgttgccag
ggaccactcgaggaggtgaagaggaagtttcctctcacagaagtggagaagaaaaagaag
ctgaagacgagtgcacagatttttggcaaagactctggggagccagatgccaagatggca
aaaggagacgaagaggaagattataacctggctgacattgccgaaggctcagttacttcg
gtgggaagcgtggctccaacaaaagacttccggactctgatcaagaagaagtgtcttcca
ttcggagaggtctgtcagcaactgatttgcaggctggagcagttgcttagcaacaagaac
acatcgtacttcatgaaaagcatcacctgtatcctggcttttagagagcagtctgttgag
ctcggggatgccaatctgtacaatggctacctgcggtccctgaagaagagcatcccaaac
agagggctggaggtcttctgggacctgcttgttcaagatgctgtaactctgatcagcaag
gacgaggttaaaggaagcagtgtatccaaaaccgaagctgatcagtttctggttactgag
gagaagataaaggaggcagctgcaccaccagctgatactggagatgttgatgacttgctg
gacatgatgtaa
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