Pseudoliparis swirei (Mariana hadal snailfish): 130204014
Help
Entry
130204014 CDS
T09868
Symbol
heatr1
Name
(RefSeq) HEAT repeat-containing protein 1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130204014 (heatr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130204014 (heatr1)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
130204014 (heatr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_HEATR1
U3snoRNP10
HEAT_EZ
HEAT
Arm
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
130204014
NCBI-ProteinID:
XP_056286463
LinkDB
All DBs
Position
13:complement(21979702..22015390)
Genome browser
AA seq
1819 aa
AA seq
DB search
MTSLAHQLRRLALPQSDPNLLTRGEVASLLFDPKVAVSMDRSTFYALGCTGLEELMGIEP
AFLEFQDTLFSRASLTLERSVQSREVNEKLDAGVSLFLARLSPYFLLKPAHKCLEWLVHR
FHVQLYNADALLRCSLPFHDTNVFVRVLQLLKISAGRWSWLLGLQKAGVPLSRGALVAHC
YSDLSFMDFICSLVTGSVQAYSGRSGSCSQLRVIFSFYASTIVSALAAVDKVSDAMIAKL
LPFVHKGLKSSLTDYRAATLMVVCQLAVAVPLEAGLVDVLAAHVARSLLGDPVLAQEGLG
CLVVLLQNQKEGSAGPRAAVSLGAMPALASGLRAVAAAHDVAPLLRYLLPHLVRAALSGS
GEEDQLAVLESVLEAVPLTGGLDRTAARCVFSAYLSQADLSPDAAAAFDRRLLPLVRLLE
SRYGAALDGVLAAHVTGGGGEQRSLYHRFLCLSLSRGKHQSASESSALKVLEVLLDVLDP
EDVVLSLLALLHSADLSVAESWLPVLTEAVRLLSDPRLGQADAELLQKAGWRLLPLLVVS
SSSSSSSQLLFTSCLAHSSIVARHPLTMNWAQELDEVMKRSSEPDFLGLANERLVAVMSA
GLLSMELFSRRDALERLAQAVEGQRGSGPRARASFLVLTQTLLLGLRGLSETQHLLTAQR
VYALLEAPLLEATGGAAAQEDGRCNSAPPSSFSGALALYLSRCGQQPGERLDTEFSFVLI
ALLRDFIGSLRCHDASFKGDVWWNPEKMDTNTCCYLGLTCRLFSVIIRGAGEGPASGSFR
DLMKLLIKVHLCEPPMLFRFLCLLWGYGSNHGDQLDVKVGAVLQTQALYVGGALLSAQSA
AALQQLAAADSPVVPSLLCCLTSPVREVRRAALAALRGLSGAAASPFRPITERLLKNSEE
IIADPAYLSQVLGALQDESAAATEATPLRASLQQLLQSAGAPGCPSYSACCLLRALSHTN
GPAVLSELLPVLDRLLDQSGPDAPSLLRSEAQLVQLVLGKYNAASAPLLGQNQNCLDLFV
RALRNSAQPHPDIPSCQIIALEQVSRSFFSALGLQAVQQKLLSAMLDVLVESRSPMETHA
VRSAFRGMAVDGQLVANELAPPEKPKVSVTVQQSRRSRTSQRKPVEAVNGGPDGGPAGGP
AGGAVPWQRVTLILELLQHKKKLKRAETLVPVLFTLLARSLDPCPSDLNMEYTKQLLLGC
LLNVCHRLRPEGGAVGPDLLDEEKFSVELVVQVIRASDMPQTHHHALLLLGAAAAIFPEK
VLLNIMPIFTFMGANIMRLDDAYSFRVIEQTVQVVIPALIQAHQLSDGSSSPHVVAVVTR
ILHVFADALPHVPHHRRLPILSQLVTTLGPARFLWVLMLLLFKLHATQTAGSTGEKDAAL
ERDVDFWVSLCCEFTASEQLSSLVSLLLFLLKLPDDKQDAPAKRRPGPKKKSKEEEEKEV
EKEVEELIFSPEAHSSKELRHFKFLSVSFMAQLLGSAGFIGKVADAADVVDESLQQRLLE
EILRYIHAVARRVEDDADKPTAKFWRVLLNKAYEVLDKVNSLLPTDTFIAVMRGLMGNEL
PSVRRKAMELLNNKLQHHAQWEEHQVTVLLQLTGDLLSIVGQSGCKAMEAEREAEHAINR
QTALYSLKLLCRSFGAAHQEAFVPVLQLAVDIITAPEEEKNVTGSALLCVAEVVGALKAL
AIPHLPRLVPALLGVLTHRKELLTNEIYLLSAVSALQRVPHPHSPGPPGIAPWATNPGGW
TAEAPKTVPPPDPQVRFSSLLMLMELASKLKENYVVLLPETIPFLAELMEDDCEEVEQQV
QKVVQEMEKILGEPLQSYF
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcactggcccaccagctgcggaggctcgcgctgcctcagagcgaccccaacctg
ctgacccgcggcgaggtggcctcgctcctcttcgaccccaaagttgccgtttccatggac
cggagcaccttctacgccctcggctgcacggggctggaggagctgatgggcatcgagccc
gccttcctggagttccaggacaccctgttcagccgggcctcgctgactctggagcgcagc
gtccagtccagggaggtcaacgagaagctggacgccggcgtctcgctgttcctcgcccgc
ctctcgccgtacttcctcctgaagccggcgcacaagtgcctcgagtggctggtccaccgg
ttccacgtgcagctctacaacgccgacgctctgctgcgctgctcgctgccgttccacgac
accaacgtgttcgtcagagttctgcagctgctgaagatcagcgccggccgctggagctgg
ctgctcggcctgcagaaagccggcgtgccgctctccagaggcgctctggtcgctcactgc
tactcggacctgagcttcatggacttcatctgctcgctggtcaccggctcggtgcaggcg
tactctggtcgctctggaagctgctcccagctcagagtgatcttctccttctacgcctcc
accatcgtctccgctctggccgccgtggacaaagtgtccgacgctatgatcgccaaactg
ctgccctttgttcacaagggtctcaagtcgtctctgacggactaccgcgccgccaccctg
atggtggtgtgccagctggcggtggcggtgccgttggaggcggggctagtcgacgtcctc
gccgcccacgtggcccggtctctgctcggggacccggtgctggcccaggagggtctgggc
tgtctcgtggtgctgctgcagaaccagaaggagggctccgccgggcccagggcggccgtg
tctctgggcgccatgccggcgctcgcctccgggctgcgggccgtggcggcggcccacgac
gtcgccccgctgctgcgctacctgctgccgcacctggtccgcgccgcgctcagcggctca
ggtgaggaggaccagctcgccgtgttggagtcggtgctggaggccgtccctctgaccgga
ggcctggaccggaccgcggctcggtgtgtgttctctgcgtacctgagtcaggccgacctg
tcccctgacgccgcggcggccttcgaccggcgcctcctccctctggtccggctgttggag
tcccggtacggcgccgctctggacggcgtgctcgccgctcacgtgaccggcggcggcggc
gagcagaggagtctctaccaccgcttcctgtgtctgtccctgagccgtgggaaacaccag
tccgcgtcagagtcctctgccctcaaagtcctggaggttctgctggacgtgttggacccg
gaggacgtggttctgtctctgctggcgctgctgcacagcgccgacctgtcggtggccgag
agctggctgcccgtgctgacggaggcggtgcgtttactgtccgacccccggctgggacaa
gcggacgccgagctgctgcagaaggcgggctggcggctgctgcccctgctggtggtctcc
tcctcctcctcctcctcctcccagctcctcttcacctcctgcctcgctcactcctccatc
gtcgcccgccacccgctcaccatgaactgggctcaagagctggacgaggtgatgaagagg
agcagtgagcctgacttccttggcctggccaacgagcgcctcgtggccgtgatgagcgcc
ggcctcctgagcatggagctcttctcccggcgcgatgccctggagcggctggcccaggcg
gtggaggggcagcggggctctggcccgcgggcccgggcctccttcctggtgctgacccag
actctgctgctgggtctgagggggctgagcgagacccagcacctgctcaccgcccagcgg
gtctacgcgctgctggaggcgccgctgctggaggccaccgggggcgccgccgcgcaggaa
gatggccgctgtaactccgcccccccctcctccttctctggagccctggctctgtacctg
agcaggtgtgggcagcagccaggtgagcggctggacacggagttcagcttcgtcctcatc
gctctgctcagagacttcatcggctccctcaggtgtcacgacgcctccttcaaaggtgac
gtgtggtggaacccggagaagatggacactaacacctgttgttacctggggctcacctgc
cgcctcttcagtgtcatcatcagaggcgccggcgagggtccggcgtctggcagcttcagg
gacttgatgaagctgctcatcaaggttcacctgtgcgagccgccgatgctcttccgcttc
ctgtgcctgctgtggggctacggcagtaaccacggcgaccagctggacgtgaaggtgggc
gccgtcctgcagacccaggcgctgtacgtgggcggagctctgctgagcgcccagtcggcc
gccgcgctgcagcagctggccgccgccgactcgcctgtggtcccgtcgttgctctgctgt
ctcacctctccggtccgggaggtccggagggcggcgctcgccgctctgcgcggcctatcg
ggcgccgccgcgtctcccttccggccaatcacagagaggcttctgaagaactcggaggag
atcatcgccgacccggcgtacctgagccaggtgctcggagcgctgcaggacgagagcgcc
gccgccaccgaggccacgccgctgcgggcgtctctccagcagctgctgcagagcgccgga
gcgccgggctgcccgtcatacagcgcctgctgcctgctgcgagcgctgagccacaccaac
ggaccggccgtcctctctgagctgctcccggttctggaccggctgctggaccagagcggg
cccgacgcccccagcctgctgcgctccgaggcccagctggtgcagctggtcctggggaag
tacaacgcggcgtcggcccccctgctgggccagaaccagaactgtctggacctgttcgtc
agagcccttaggaactccgcccagccgcaccccgacatccccagctgccagatcatcgcc
ctggaacaggtgagccggtccttcttctcggctctcggcctccaggccgtgcagcagaag
ctgctgtcggccatgttggacgttctggtggagagtcggagtccaatggagacgcacgcc
gtgaggagcgccttcagggggatggcggttgatggtcagctggtagccaatgagctcgct
ccgcctgagaaacccaaagtgagcgtgacggtgcagcagagccgccggagccggacgagc
cagaggaagcctgtggaggccgtcaatggcggtccagatggtggtccagcagggggtcca
gcagggggcgctgtgccgtggcagagagtcacgctgatcctggagctgctgcagcacaag
aagaagctgaagagggccgagacgctggtgccggttctgttcacgctgctcgccaggagt
ctggatccgtgtccgtcggacctcaacatggagtacaccaagcagctgctgctcggctgc
ctgctcaacgtgtgccaccgcctgcgtcctgaagggggcgctgtgggtccagacctgctg
gatgaggagaagttcagcgtggagctcgtggttcaggtgatccgagcgtccgacatgcct
cagacgcaccaccacgccctgctgctgctcggcgccgccgccgccatcttccccgagaag
gtgctgctcaacatcatgcccatcttcaccttcatgggcgccaacatcatgaggctggac
gacgcctacagcttcagggtcatcgagcagacggtgcaggtggtgatacctgctctgatc
caggctcaccagctctctgatggctcctcctccccccacgtggttgccgtggttactcgc
atccttcacgtgtttgccgacgctcttcctcacgtgccgcatcaccggcggctgcccatc
ctcagccagctggtgaccacgctgggccccgcccgcttcctctgggtcctaatgctcctc
ctgttcaagctgcacgccacgcagaccgccggctccaccggcgagaaggacgccgccctg
gagagagacgtggacttctgggtgtctctgtgctgcgagttcacggcgagcgagcagctc
tcctccctcgtcagcctcctcctcttcctcctcaagctgcccgacgacaagcaggacgct
ccggcgaagcgccggccgggacccaagaagaagagcaaggaggaggaggagaaggaggtg
gagaaggaggtggaggagctgatcttcagcccggaggctcacagcagcaaagagctccga
cacttcaagttcctctccgtgtccttcatggctcagctgctcggctcggccggcttcatc
ggcaaggtggcggatgcagccgacgtggtggacgagtctctgcagcagaggctgctggag
gagatcctgcgctacatccacgccgtcgctcgccgtgtggaggacgacgccgacaagccc
accgccaagttctggagggttctgctcaacaaggcctacgaggttctggataaggtgaac
tccctgttgcccacggataccttcatcgcggtgatgagggggctgatgggcaacgagctg
ccctccgtcaggaggaaggcgatggagctgctgaacaacaagctgcagcaccacgctcag
tgggaggagcatcaggtcacggtgctgctacagctgaccggagacctcctgagcattgtg
ggtcaaagcggttgcaaggcgatggaggcggagcgggaggcggagcacgccatcaaccgc
cagacggcgctctacagcctcaagctgctctgtcgcagcttcggcgccgcccaccaggag
gcgttcgtccccgtgctgcagctggcggtcgacatcatcacggcgccggaggaggagaag
aacgtgacgggcagcgcgctgctctgcgtggccgaggtggtcggcgccctgaaggcgctc
gccatcccacacctacccaggttggtgccggcgctgctcggcgtgctgacccacaggaag
gagctgctgaccaatgagatctacctgctgagcgccgtcagcgccctgcagcgcgtcccc
cacccccactccccgggccccccggggattgccccctgggccaccaaccccggggggtgg
actgctgaagcccccaaaacggtgcccccccccgacccccaggtgcgtttctcctctctc
ttgatgttgatggaattggcctccaaactgaaggagaactacgtggttcttctcccagag
accatccccttcctggctgagctgatggaggatgactgtgaggaggtggagcagcaggtc
cagaaggtggtgcaggagatggagaagatcctgggagaaccgctgcagagctacttctaa
DBGET
integrated database retrieval system
