Pseudoliparis swirei (Mariana hadal snailfish): 130204276
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Entry
130204276 CDS
T09868
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130204276 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130204276 (ddx3xb)
03041 Spliceosome [BR:
pswi03041
]
130204276 (ddx3xb)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130204276 (ddx3xb)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130204276 (ddx3xb)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130204276 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
130204276 (ddx3xb)
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130204276 (ddx3xb)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130204276 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
130204276
NCBI-ProteinID:
XP_056286844
LinkDB
All DBs
Position
14:7007309..7024600
Genome browser
AA seq
708 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLSAADGHGGGANPGNAFAAARQGGYTIAPAANYGWDGGRN
NFVNGYHDNRMAGGNTFNRGPPRMERGRGGVGGGYRGNRGGVFNPINPAQPMVFGGYENK
DAGGWNTAKDAYGNFGNNRGKSAFFNDRGNANRGRFEHGGFGGGGGGGGNSRWVEESREE
GDWAKPTPRNERLESELFAGSNTGINFEKYDDIPVEATGQNCPQHINSFQDVDMGEIVMG
NITLSRYTRPTPVQKYAIPIVKAKRDLMACAQTGSGKTAAFLLPILSQIYNDGPLEVLNA
TKASGQDNGKYGRRKHFPISLVLAPTRELALQIYDEARKFSYRSRVRPCVVYGGADIGQQ
IRDLERGCHLLVATPGRLVDMMERGKIGLDYCTYLVLDEADRMLDMGFEPQIRRIVEQDT
MPHKGIRQTMMFSATFPKEIQVLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRS
FLLDLLSATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALSQFRT
GKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKN
GNITKDLLDILIEAKQEVPSWLETLAYEHQHKSSTRGRSKRFSGGFGSRDYRQTAAGGTA
GGFGGRGGRNQAAHGGTRGFGGGGFGNFYTTDAYGGNYAHSQVDWWGN
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagaacagcagctcgctgtcctagac
ttgagtgcggcagatggacacggtggaggcgctaacccaggaaatgccttcgctgccgct
cgacagggcggctacaccatagcgcccgcagccaactatggttgggatggggggcgcaac
aactttgttaacggctaccatgacaaccgcatggctggcggcaacacgtttaaccgtggc
ccgcctcgcatggagcggggcagaggtggagtcggagggggttaccgaggcaacaggggt
ggtgtcttcaaccccatcaacccagcacagccgatggtttttggcggctacgaaaataaa
gatgccggcggctggaacactgcgaaagacgcctatggcaattttggcaacaaccgtggc
aagtctgcattcttcaatgacagaggcaatgctaacagaggaaggtttgagcatggtgga
ttcggtggtggtggtggtggcggtggaaacagccgctgggtggaagagtccagagaggag
ggagactgggccaaaccaacaccacgcaacgagcgccttgaaagtgaattgtttgccggc
agtaacactgggattaactttgagaaatacgatgacattcccgttgaggccacaggacag
aactgccctcaacacatcaacagtttccaagatgtggacatgggtgagattgtcatgggt
aacattactctgagtcgctacaccagaccgacccctgtccagaaatatgccattcccatt
gtcaaggccaagagagacctcatggcatgtgcacagacgggttctgggaagactgcagcg
ttcctgctgccgattctcagccagatttacaatgacggaccattagaagttctcaacgca
actaaagcatctggacaggacaatggaaagtatgggcgtcgtaagcacttccccatctca
ctggtattggctccaaccagagaactggcactgcagatatatgatgaggccaggaagttt
tcctaccgctccagagtgcgtccctgtgtggtgtatggaggagccgacattggccagcag
ataagagatctggagagaggttgccacctgctggttgccacacctgggcgactggtggac
atgatggagagaggaaagattggactggactactgcacatacctggtcctggatgaggcg
gatcgtatgttggacatgggattcgaaccacagataagacgcatcgttgaacaggacacc
atgccacacaaaggcatccgacaaaccatgatgttcagcgcaacctttcctaaagagatc
caggtcctagctagggatttcctggacgagtacatcttcctggcggtgggcagagtgggt
tccacctccgagaacatcacccagaaggttgtgtgggtggaggagagcgataagaggtcc
ttcctgttggacctgctcagtgctacaggtaaggactcgttgactctggtcttcgtggag
accaagaaaggcgccgacgccttggaggacttcctgtatcgggagggctacgcctgcacc
agtatccacggcgaccgctcccagagagaccgagaggaggccctgagccagttcagaaca
ggaaaatgccccatcctggtggccacagcggtagcggctcgcggtctggacatctccaat
gtgaaacatgtgattaacttcgacctgcccagtgacatcgaggagtatgtccaccgtatc
ggacgtacaggacgagtcggaaacctgggactggccacgtcgttcttcaacgataaaaat
gggaacatcactaaagacctgctggacatcctgatagaggctaaacaggaagttccctca
tggctcgagaccctggcctatgaacaccagcataagagcagcaccagaggacgctccaag
aggttctctggtggttttggatcacgtgattatcgtcagacggccgccggaggcaccgct
ggagggttcggaggacgtggaggtcgcaaccaggcagcacacggaggaacccgcgggttc
ggaggaggtggtttcggtaacttctacaccaccgacgcctacggaggaaactacgcacac
tctcaagttgactggtggggcaactag
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